Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   FDF20_RS16860 Genome accession   NZ_CP040050
Coordinates   3469112..3469930 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain VB16141     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3464112..3474930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDF20_RS16845 (FDF20_16845) pilE 3464329..3464754 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  FDF20_RS16850 (FDF20_16850) pilY2 3464751..3465233 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  FDF20_RS16855 (FDF20_16855) pilY1 3465246..3469100 (-) 3855 WP_045543713.1 PilC/PilY family type IV pilus protein Machinery gene
  FDF20_RS16860 (FDF20_16860) pilX 3469112..3469930 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FDF20_RS16865 (FDF20_16865) pilW 3469927..3470928 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  FDF20_RS16870 (FDF20_16870) pilV 3470929..3471489 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  FDF20_RS16875 (FDF20_16875) fimU 3471483..3471956 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FDF20_RS16880 (FDF20_16880) ispH 3472126..3473076 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FDF20_RS16885 (FDF20_16885) gmk 3473199..3473828 (+) 630 WP_000015937.1 guanylate kinase -
  FDF20_RS16890 (FDF20_16890) rpoZ 3473901..3474179 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FDF20_RS16895 (FDF20_16895) - 3474217..3474347 (+) 131 Protein_3281 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=361818 FDF20_RS16860 WP_000149374.1 3469112..3469930(-) (pilX) [Acinetobacter baumannii strain VB16141]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=361818 FDF20_RS16860 WP_000149374.1 3469112..3469930(-) (pilX) [Acinetobacter baumannii strain VB16141]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment