Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | FDF20_RS16845 | Genome accession | NZ_CP040050 |
| Coordinates | 3464329..3464754 (-) | Length | 141 a.a. |
| NCBI ID | WP_000788342.1 | Uniprot ID | N9K1U0 |
| Organism | Acinetobacter baumannii strain VB16141 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3459329..3469754
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDF20_RS16815 (FDF20_16815) | - | 3459859..3460893 (+) | 1035 | WP_001189451.1 | lipase secretion chaperone | - |
| FDF20_RS16820 (FDF20_16820) | - | 3461008..3461949 (+) | 942 | WP_085946156.1 | lipase family alpha/beta hydrolase | - |
| FDF20_RS16825 (FDF20_16825) | rplS | 3462001..3462369 (-) | 369 | WP_000014562.1 | 50S ribosomal protein L19 | - |
| FDF20_RS16830 (FDF20_16830) | trmD | 3462577..3463317 (-) | 741 | WP_000464599.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FDF20_RS16835 (FDF20_16835) | rimM | 3463363..3463911 (-) | 549 | WP_000189236.1 | ribosome maturation factor RimM | - |
| FDF20_RS16840 (FDF20_16840) | rpsP | 3463931..3464182 (-) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| FDF20_RS16845 (FDF20_16845) | pilE | 3464329..3464754 (-) | 426 | WP_000788342.1 | type IV pilin protein | Machinery gene |
| FDF20_RS16850 (FDF20_16850) | pilY2 | 3464751..3465233 (-) | 483 | WP_001046417.1 | type IV pilin protein | Machinery gene |
| FDF20_RS16855 (FDF20_16855) | pilY1 | 3465246..3469100 (-) | 3855 | WP_045543713.1 | PilC/PilY family type IV pilus protein | Machinery gene |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15214.45 Da Isoelectric Point: 7.8464
>NTDB_id=361815 FDF20_RS16845 WP_000788342.1 3464329..3464754(-) (pilE) [Acinetobacter baumannii strain VB16141]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE
Nucleotide
Download Length: 426 bp
>NTDB_id=361815 FDF20_RS16845 WP_000788342.1 3464329..3464754(-) (pilE) [Acinetobacter baumannii strain VB16141]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Acinetobacter baumannii D1279779 |
92.199 |
100 |
0.922 |
| comF | Acinetobacter baylyi ADP1 |
52.143 |
99.291 |
0.518 |