Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FDF20_RS01970 Genome accession   NZ_CP040050
Coordinates   404904..405314 (+) Length   136 a.a.
NCBI ID   WP_045544546.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain VB16141     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399904..410314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDF20_RS01955 (FDF20_01955) - 400893..403199 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  FDF20_RS01960 (FDF20_01960) - 403244..404017 (-) 774 WP_045544547.1 SDR family oxidoreductase -
  FDF20_RS01965 (FDF20_01965) mazG 404129..404935 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  FDF20_RS01970 (FDF20_01970) comEA 404904..405314 (+) 411 WP_045544546.1 ComEA family DNA-binding protein Machinery gene
  FDF20_RS01975 (FDF20_01975) pcnB 405439..406902 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  FDF20_RS01980 (FDF20_01980) folK 406899..407381 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FDF20_RS01985 (FDF20_01985) panB 407427..408236 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  FDF20_RS01990 (FDF20_01990) panC 408240..409088 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  FDF20_RS01995 (FDF20_01995) rapZ 409111..409962 (+) 852 WP_000821671.1 RNase adapter RapZ -
  FDF20_RS02000 (FDF20_02000) - 409959..410228 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15674.96 Da        Isoelectric Point: 10.3495

>NTDB_id=361798 FDF20_RS01970 WP_045544546.1 404904..405314(+) (comEA) [Acinetobacter baumannii strain VB16141]
MQYSMRFWKNKYFLLIMLCLGVISPSVCAQSFDQNFQEWKVKQQMYDQKLNISKSSHSNSSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGSAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=361798 FDF20_RS01970 WP_045544546.1 404904..405314(+) (comEA) [Acinetobacter baumannii strain VB16141]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTGCGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATAGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGATCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

98.529

100

0.985
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

43.511

96.324

0.419

Multiple sequence alignment