Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FCL38_RS16445 Genome accession   NZ_CP040017
Coordinates   3966030..3967550 (-) Length   506 a.a.
NCBI ID   WP_137314677.1    Uniprot ID   A0A4P8HQ12
Organism   Pseudoduganella umbonata strain DSMZ 26121     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3961030..3972550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCL38_RS16435 (FCL38_16435) - 3961091..3962197 (-) 1107 WP_137314675.1 ribonucleotide-diphosphate reductase subunit beta -
  FCL38_RS16440 (FCL38_16440) - 3962373..3965324 (-) 2952 WP_137314676.1 ribonucleoside-diphosphate reductase subunit alpha -
  FCL38_RS16445 (FCL38_16445) pilR 3966030..3967550 (-) 1521 WP_137314677.1 sigma-54 dependent transcriptional regulator Regulator
  FCL38_RS16450 (FCL38_16450) - 3967547..3969262 (-) 1716 WP_229422233.1 PAS domain-containing sensor histidine kinase -
  FCL38_RS16455 (FCL38_16455) - 3969297..3969566 (-) 270 WP_137314678.1 PP0621 family protein -
  FCL38_RS16460 (FCL38_16460) - 3969563..3970366 (-) 804 WP_137314679.1 inner membrane protein YpjD -
  FCL38_RS16465 (FCL38_16465) - 3970497..3971294 (-) 798 WP_137317508.1 ABC transporter ATP-binding protein -
  FCL38_RS16470 (FCL38_16470) - 3971308..3972129 (-) 822 WP_137314680.1 ABC transporter permease -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53512.46 Da        Isoelectric Point: 4.9596

>NTDB_id=361635 FCL38_RS16445 WP_137314677.1 3966030..3967550(-) (pilR) [Pseudoduganella umbonata strain DSMZ 26121]
MSSTSRSSPRVLVVDDEDDLRDLLEITLLKMGLDVDGAADLASARALLAAHDYDLVLTDMRLPDGLGLDLVREIAASGRI
LPVAVVTAFGSAENAVVALKAGAFDYVTKPLQLDQLRQMVQSALKLNVPAGPAVPGAEPVDSRLKGQSAAMQALRAQIAR
LARSMAPIAITGESGSGKELAAREIHAQGARADKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFQAANGGTL
MLDEVADLPLPMQVKLLRAIQERRVRKIGATAEEPVDVRIVSATHQDLARCVEQGRFRQDLFYRLNVIELSLPPLRERLD
DLPVLTGAILARLTGAGGQPATLGPGVLEALRGYSFPGNVRELENILERALAFSNDGVIGVADLALKGARLAEPQAAAPA
PAPAASSAASSAPVLTPVSTPVSAPAAVPPGALGPGPAGERMPPLPDLSVLPSNLPAYLERVEREIIVRALDQTQYNRTQ
AAQLLGISFRQLRYQMQKLGIQEPEG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=361635 FCL38_RS16445 WP_137314677.1 3966030..3967550(-) (pilR) [Pseudoduganella umbonata strain DSMZ 26121]
ATGAGTTCCACCTCCCGCAGTTCTCCCCGCGTCCTGGTGGTGGACGATGAAGACGACCTGCGCGACCTGCTGGAGATCAC
GCTGCTCAAGATGGGACTGGACGTGGACGGCGCGGCCGACCTGGCCAGCGCCCGCGCGCTGCTGGCCGCGCACGACTACG
ACCTGGTGCTGACGGACATGCGCCTGCCGGACGGCCTGGGCCTCGACCTGGTGCGCGAGATCGCCGCCAGCGGCCGCATC
CTGCCGGTGGCCGTGGTCACCGCCTTCGGCAGCGCGGAAAACGCCGTGGTGGCACTGAAGGCCGGTGCCTTCGATTACGT
GACGAAGCCGCTGCAGCTCGACCAGCTGCGCCAGATGGTGCAGTCGGCATTGAAGCTGAACGTGCCCGCCGGCCCCGCCG
TGCCGGGCGCGGAGCCGGTGGACAGCCGCCTGAAAGGGCAATCGGCGGCCATGCAGGCGCTGCGGGCGCAGATCGCCCGG
CTGGCCCGCTCGATGGCGCCGATCGCGATCACCGGCGAATCGGGGTCCGGCAAGGAACTGGCCGCCCGCGAGATCCATGC
GCAGGGCGCGCGCGCCGACAAGCCGTTCATCGCCGTCAACTGCGGGGCAATCCCCGAGGCGCTGATGGAAGCCGAATTCT
TCGGCTACCGCAAGGGCGCATTCACCGGCGCGGCGGACGAGCGCGACGGCTTCTTCCAGGCCGCCAACGGCGGCACGCTG
ATGCTCGACGAAGTGGCGGACCTGCCGTTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAA
GATCGGCGCCACCGCCGAGGAACCGGTGGACGTGCGCATCGTCAGCGCCACCCACCAGGACCTGGCGCGCTGCGTGGAGC
AGGGCCGGTTCCGGCAGGACCTGTTCTATCGCCTGAACGTGATCGAGCTGTCGCTGCCGCCGCTGCGCGAACGGCTCGAC
GACCTGCCGGTGCTGACCGGCGCGATCCTGGCCCGGCTGACCGGCGCGGGCGGACAGCCGGCCACGCTGGGGCCGGGCGT
CCTGGAGGCGCTGCGCGGCTACAGTTTTCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAACGGGCGCTGGCGTTTT
CCAACGACGGCGTGATCGGCGTGGCCGACCTGGCGCTGAAGGGCGCCAGGCTGGCCGAACCCCAGGCGGCGGCCCCGGCA
CCCGCGCCTGCCGCGTCGTCGGCCGCGTCGTCGGCCCCGGTGCTTACGCCGGTTTCCACTCCGGTTTCGGCCCCGGCCGC
GGTGCCGCCGGGCGCCCTTGGGCCGGGGCCGGCCGGCGAGCGGATGCCGCCATTGCCCGACCTGTCGGTGCTGCCCTCGA
ACCTGCCGGCCTACCTGGAGCGGGTGGAGCGGGAGATCATCGTGCGCGCCCTCGACCAGACGCAGTACAACCGCACCCAG
GCCGCGCAACTGCTCGGCATCAGTTTCCGGCAGCTGCGCTACCAGATGCAGAAACTGGGGATCCAGGAGCCGGAGGGCTG
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-121)

Bacterial regulatory protein, Fis family (HTH_8)

(459-499)

Sigma-54 interaction domain (Sigma54_activat)

(145-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P8HQ12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.815

98.024

0.508
  pilR Acinetobacter baumannii strain A118

42.485

98.617

0.419

Multiple sequence alignment