Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   FCJ76_RS19320 Genome accession   NZ_CP039935
Coordinates   3706910..3707029 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   A0AA96UN30
Organism   Bacillus subtilis strain H19     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3701910..3712029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS19295 albG 3702073..3702774 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  FCJ76_RS19300 ywhL 3702780..3704156 (-) 1377 WP_086344439.1 YncE family protein -
  FCJ76_RS19305 ywhK 3704196..3705551 (-) 1356 WP_137201081.1 YncE family protein -
  FCJ76_RS21585 - 3705548..3705778 (-) 231 WP_024572000.1 hypothetical protein -
  FCJ76_RS19315 rapF 3705781..3706926 (+) 1146 WP_134982264.1 response regulator aspartate phosphatase RapF Regulator
  FCJ76_RS19320 phrF 3706910..3707029 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  FCJ76_RS19325 - 3707127..3707589 (+) 463 Protein_3723 YbaK/EbsC family protein -
  FCJ76_RS19330 speB 3707621..3708493 (-) 873 WP_003227545.1 agmatinase -
  FCJ76_RS19335 speE 3708554..3709384 (-) 831 WP_003227543.1 spermidine synthase -
  FCJ76_RS19340 pbpG 3709586..3711661 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=361166 FCJ76_RS19320 WP_041334633.1 3706910..3707029(+) (phrF) [Bacillus subtilis strain H19]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=361166 FCJ76_RS19320 WP_041334633.1 3706910..3707029(+) (phrF) [Bacillus subtilis strain H19]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment