Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FCJ76_RS18245 Genome accession   NZ_CP039935
Coordinates   3496222..3496911 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain H19     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3491222..3501911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS18210 flgN 3491406..3491888 (-) 483 WP_014481048.1 flagellar protein FlgN -
  FCJ76_RS18215 flgM 3491904..3492170 (-) 267 WP_134982987.1 flagellar biosynthesis anti-sigma factor FlgM -
  FCJ76_RS18220 yvyF 3492251..3492670 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  FCJ76_RS18225 comFC 3492744..3493466 (-) 723 WP_134982986.1 comF operon protein ComFC Machinery gene
  FCJ76_RS18230 comFB 3493430..3493726 (-) 297 WP_015483764.1 late competence protein ComFB -
  FCJ76_RS18235 comFA 3493786..3495173 (-) 1388 Protein_3503 ATP-dependent helicase ComFA -
  FCJ76_RS18240 fakBA 3495279..3496124 (-) 846 WP_137201059.1 DegV family protein -
  FCJ76_RS18245 degU 3496222..3496911 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FCJ76_RS18250 degS 3496994..3498151 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  FCJ76_RS18255 yvyE 3498368..3499021 (+) 654 WP_003227979.1 YigZ family protein -
  FCJ76_RS18260 tagV 3499021..3500187 (+) 1167 WP_137201061.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  FCJ76_RS18265 tagO 3500260..3501336 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=361160 FCJ76_RS18245 WP_003219701.1 3496222..3496911(-) (degU) [Bacillus subtilis strain H19]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=361160 FCJ76_RS18245 WP_003219701.1 3496222..3496911(-) (degU) [Bacillus subtilis strain H19]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCAAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGTGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment