Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   FCJ76_RS18225 Genome accession   NZ_CP039935
Coordinates   3492744..3493466 (-) Length   240 a.a.
NCBI ID   WP_134982986.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3487744..3498466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS18190 fliW 3487883..3488314 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  FCJ76_RS18195 yviE 3488335..3488910 (-) 576 WP_134982989.1 DUF6470 family protein -
  FCJ76_RS18200 flgL 3488957..3489853 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  FCJ76_RS18205 flgK 3489864..3491387 (-) 1524 WP_134982988.1 flagellar hook-associated protein FlgK -
  FCJ76_RS18210 flgN 3491406..3491888 (-) 483 WP_014481048.1 flagellar protein FlgN -
  FCJ76_RS18215 flgM 3491904..3492170 (-) 267 WP_134982987.1 flagellar biosynthesis anti-sigma factor FlgM -
  FCJ76_RS18220 yvyF 3492251..3492670 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  FCJ76_RS18225 comFC 3492744..3493466 (-) 723 WP_134982986.1 comF operon protein ComFC Machinery gene
  FCJ76_RS18230 comFB 3493430..3493726 (-) 297 WP_015483764.1 late competence protein ComFB -
  FCJ76_RS18235 comFA 3493786..3495173 (-) 1388 Protein_3503 ATP-dependent helicase ComFA -
  FCJ76_RS18240 fakBA 3495279..3496124 (-) 846 WP_137201059.1 DegV family protein -
  FCJ76_RS18245 degU 3496222..3496911 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  FCJ76_RS18250 degS 3496994..3498151 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27538.77 Da        Isoelectric Point: 9.1349

>NTDB_id=361159 FCJ76_RS18225 WP_134982986.1 3492744..3493466(-) (comFC) [Bacillus subtilis strain H19]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSSEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=361159 FCJ76_RS18225 WP_134982986.1 3492744..3493466(-) (comFC) [Bacillus subtilis strain H19]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGGCATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCTCACCACCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCATCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGTTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment