Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   EA667_RS16125 Genome accession   NZ_CP039930
Coordinates   3319911..3320321 (-) Length   136 a.a.
NCBI ID   WP_002125991.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain TG29392     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3314911..3325321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EA667_RS16095 (EA667_016095) - 3314997..3315266 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  EA667_RS16100 (EA667_016100) rapZ 3315263..3316114 (-) 852 WP_000821671.1 RNase adapter RapZ -
  EA667_RS16105 (EA667_016105) panC 3316137..3316985 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  EA667_RS16110 (EA667_016110) panB 3316989..3317798 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  EA667_RS16115 (EA667_016115) folK 3317844..3318326 (-) 483 WP_000219220.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  EA667_RS16120 (EA667_016120) pcnB 3318323..3319786 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  EA667_RS16125 (EA667_016125) comEA 3319911..3320321 (-) 411 WP_002125991.1 ComEA family DNA-binding protein Machinery gene
  EA667_RS16130 (EA667_016130) mazG 3320290..3321096 (-) 807 WP_000359482.1 nucleoside triphosphate pyrophosphohydrolase -
  EA667_RS16135 (EA667_016135) - 3321208..3321981 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  EA667_RS16140 (EA667_016140) - 3322026..3324332 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.97 Da        Isoelectric Point: 10.4475

>NTDB_id=361065 EA667_RS16125 WP_002125991.1 3319911..3320321(-) (comEA) [Acinetobacter baumannii strain TG29392]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=361065 EA667_RS16125 WP_002125991.1 3319911..3320321(-) (comEA) [Acinetobacter baumannii strain TG29392]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment