Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FAH67_RS10570 Genome accession   NZ_CP039886
Coordinates   2067070..2067483 (+) Length   137 a.a.
NCBI ID   WP_341869382.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062070..2072483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS10565 (FAH67_10565) comE 2066518..2066805 (+) 288 WP_039863774.1 helix-hairpin-helix domain-containing protein Machinery gene
  FAH67_RS10570 (FAH67_10570) comP 2067070..2067483 (+) 414 WP_341869382.1 type IV pilin protein Machinery gene
  FAH67_RS10575 (FAH67_10575) uvrB 2067743..2069770 (+) 2028 WP_003682019.1 excinuclease ABC subunit UvrB -
  FAH67_RS10580 (FAH67_10580) - 2069798..2070982 (+) 1185 WP_003682021.1 DUF262 domain-containing protein -
  FAH67_RS10585 (FAH67_10585) - 2070969..2071766 (+) 798 WP_003682022.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14949.36 Da        Isoelectric Point: 9.6318

>NTDB_id=360918 FAH67_RS10570 WP_341869382.1 2067070..2067483(+) (comP) [Neisseria flavescens strain ATCC 13120]
MLLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTSTKWPELPVKEAGGFCIRMNGQAKGILEG
KFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECKPFGA

Nucleotide


Download         Length: 414 bp        

>NTDB_id=360918 FAH67_RS10570 WP_341869382.1 2067070..2067483(+) (comP) [Neisseria flavescens strain ATCC 13120]
ATGCTGTTGGTTTCGATATTGGCGACGGCGGCATTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGGC
GCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACGA
AGTGGCCGGAGCTGCCGGTGAAGGAGGCGGGTGGTTTCTGCATTCGGATGAACGGTCAGGCTAAGGGGATACTGGAAGGG
AAGTTTACCCTGAAGGCGGTGGCGTTGGACAGGGAGGCGGAGCCGAGGGTATTACGCTTGAACGAGTCGCTGACGGCGGT
GGTGTGCGGGAAGATGAAGGGGAAGGGAAGCTGTACGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAAC
CATTTGGCGCATAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(14-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

97.037

98.54

0.956
  comP Neisseria meningitidis 8013

51.852

98.54

0.511
  comP Neisseria gonorrhoeae MS11

51.88

97.08

0.504

Multiple sequence alignment