Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GVI48_RS22055 Genome accession   NZ_CP047697
Coordinates   4754489..4755103 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4749489..4760103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS22035 - 4750932..4751561 (+) 630 WP_003091190.1 CsiV family protein -
  GVI48_RS22040 - 4751607..4752344 (-) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  GVI48_RS22045 nagZ 4752356..4753354 (-) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  GVI48_RS22050 psrA 4753556..4754257 (-) 702 WP_016253195.1 transcriptional regulator PsrA -
  GVI48_RS22055 dinR/lexA 4754489..4755103 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  GVI48_RS22060 sulA 4755115..4755600 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  GVI48_RS22065 - 4755622..4755855 (-) 234 WP_003109483.1 hypothetical protein -
  GVI48_RS22070 - 4756061..4756579 (-) 519 WP_003113979.1 DUF6586 family protein -
  GVI48_RS22075 topA 4756686..4759292 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  GVI48_RS22080 - 4759383..4759646 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=360895 GVI48_RS22055 WP_003091196.1 4754489..4755103(+) (dinR/lexA) [Pseudomonas aeruginosa strain RD1-3]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=360895 GVI48_RS22055 WP_003091196.1 4754489..4755103(+) (dinR/lexA) [Pseudomonas aeruginosa strain RD1-3]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387

Multiple sequence alignment