Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FAH67_RS04845 Genome accession   NZ_CP039886
Coordinates   940407..941078 (+) Length   223 a.a.
NCBI ID   WP_039863486.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 935407..946078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS04825 (FAH67_04825) - 935436..936281 (+) 846 WP_003678979.1 DUF817 domain-containing protein -
  FAH67_RS04830 (FAH67_04830) - 936340..937881 (-) 1542 WP_039863489.1 OFA family MFS transporter -
  FAH67_RS04835 (FAH67_04835) - 938105..938686 (-) 582 WP_003678975.1 superoxide dismutase -
  FAH67_RS04840 (FAH67_04840) dnaB 938841..940247 (+) 1407 WP_039863488.1 replicative DNA helicase -
  FAH67_RS04845 (FAH67_04845) pilH 940407..941078 (+) 672 WP_039863486.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FAH67_RS04850 (FAH67_04850) pilV 941091..941738 (+) 648 WP_172459143.1 type IV pilus modification protein PilV -
  FAH67_RS04855 (FAH67_04855) - 941741..942679 (+) 939 WP_003678967.1 hypothetical protein -
  FAH67_RS04860 (FAH67_04860) pilK 942658..943203 (+) 546 WP_003678964.1 pilus assembly protein Machinery gene
  FAH67_RS04865 (FAH67_04865) - 943208..943696 (+) 489 WP_003678961.1 PilX family type IV pilin -
  FAH67_RS04870 (FAH67_04870) - 943749..944369 (-) 621 WP_003678959.1 Smr/MutS family protein -
  FAH67_RS04875 (FAH67_04875) - 944506..944883 (+) 378 WP_003678957.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24727.99 Da        Isoelectric Point: 7.2627

>NTDB_id=360894 FAH67_RS04845 WP_039863486.1 940407..941078(+) (pilH) [Neisseria flavescens strain ATCC 13120]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCNSQYAGNGMLAYADKNEDLRYQNDTVDLSIRSIILNGDTDKVEYSFNYIPIGTKHSAPSSSAAKEEVWWRFLPNGTFG
HSTDGKDYQFSDGHIKISLTDKSAADAETKKARATVLLINGNGHVEICAKNDERKMCEYTSKE

Nucleotide


Download         Length: 672 bp        

>NTDB_id=360894 FAH67_RS04845 WP_039863486.1 940407..941078(+) (pilH) [Neisseria flavescens strain ATCC 13120]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCAGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CGCGTAATGAGGCCGTCCGTCTAAATCTTCCCGTTTACATCTGCCCGGTCAAAATCAAATCCGATGGTTCACCCAATAAT
GGTTGCAATTCCCAATATGCCGGTAATGGTATGTTGGCCTACGCCGATAAAAACGAAGACTTACGCTATCAAAACGACAC
AGTTGATTTATCCATCCGCTCCATTATCCTTAATGGAGATACCGACAAAGTGGAATACAGCTTCAACTATATCCCTATCG
GCACTAAACACTCAGCCCCCTCCTCTTCAGCTGCAAAAGAAGAAGTCTGGTGGAGATTTCTTCCCAATGGTACATTTGGC
CATTCAACCGATGGCAAGGATTATCAATTTTCAGACGGCCATATCAAAATCAGCCTAACAGATAAATCTGCTGCCGATGC
TGAAACCAAGAAAGCCCGTGCTACCGTACTTTTAATCAATGGCAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGC
GCAAAATGTGCGAATACACTTCCAAAGAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-202)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.464

100

0.547

Multiple sequence alignment