Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FAZ30_RS05550 Genome accession   NZ_CP039731
Coordinates   1210880..1212211 (+) Length   443 a.a.
NCBI ID   WP_137009006.1    Uniprot ID   -
Organism   Aquitalea aquatilis strain THG-DN7.12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205880..1217211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ30_RS05535 - 1206363..1206833 (-) 471 WP_124641895.1 GNAT family N-acetyltransferase -
  FAZ30_RS05540 parC 1206959..1209334 (+) 2376 WP_124641897.1 DNA topoisomerase IV subunit A -
  FAZ30_RS05545 - 1209334..1210887 (+) 1554 WP_124641899.1 HAMP domain-containing sensor histidine kinase -
  FAZ30_RS05550 pilR 1210880..1212211 (+) 1332 WP_137009006.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49198.58 Da        Isoelectric Point: 5.0885

>NTDB_id=360534 FAZ30_RS05550 WP_137009006.1 1210880..1212211(+) (pilR) [Aquitalea aquatilis strain THG-DN7.12]
MNKKVLRVLVVDDEPDIRELLELTLIKMGLEVVTAGNVGEATARLAREPFDLILTDMRMPDGEGIEVVQFIADQSLDIPS
AIITAYGSTESAVRAMKAGAFDYLSKPISLAQLRTLVKSVLKVEGNGKPLSIERLVGDSAAMLEVRRMVDKLARSQAAVY
ISGESGTGKEQAARLIHEQSARAERPFVPVNCGAIPETLMESEFFGYRKGAFTGADSDRDGFFQQANGGTLFLDEVADLP
LAMQVKLLRAIQEKKVRKLGSPQEEAVDVRIICATHKDLATLADTGQFRQDLYYRLNVLPLRMPPLRELRDDIPRFIGAL
LDRFATPDNRPRLTPAAVKAMLAYNYPGNFRELENILERAIALAGDDKVDVLDLQLTPCPQSDDEQNAEYAGSEPLQDFL
DRVEREAILKALDATRFNRTQAAKLLGLTFRSMRYRMDRLGIK

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=360534 FAZ30_RS05550 WP_137009006.1 1210880..1212211(+) (pilR) [Aquitalea aquatilis strain THG-DN7.12]
ATGAATAAGAAAGTCTTGCGCGTGCTGGTCGTCGACGACGAGCCGGATATCCGCGAACTGCTGGAACTTACCCTGATCAA
GATGGGGCTGGAGGTGGTCACCGCCGGCAATGTCGGCGAAGCCACCGCCCGGCTGGCGCGCGAGCCCTTCGACCTGATCC
TCACCGACATGCGCATGCCGGATGGCGAAGGCATCGAGGTGGTGCAGTTCATTGCCGACCAGTCGCTGGATATACCCAGC
GCCATCATCACCGCCTATGGCAGCACCGAAAGTGCCGTTCGCGCCATGAAAGCCGGTGCCTTCGATTATCTGTCCAAGCC
CATCAGCCTGGCGCAGCTGCGCACGCTGGTGAAATCGGTATTAAAGGTAGAAGGCAATGGCAAGCCGCTCAGTATCGAAC
GGCTGGTGGGTGATTCGGCCGCCATGCTGGAAGTACGGCGCATGGTGGACAAGCTGGCCCGCAGTCAGGCGGCGGTCTAT
ATCAGTGGCGAATCCGGTACCGGCAAGGAGCAGGCCGCCCGGCTGATTCACGAACAGAGTGCGCGCGCCGAGCGCCCCTT
CGTACCGGTCAATTGCGGTGCCATCCCGGAAACCCTGATGGAAAGCGAATTCTTCGGTTATCGCAAGGGCGCTTTTACCG
GTGCCGACAGCGATCGCGACGGCTTTTTCCAGCAGGCCAATGGCGGCACGCTGTTCCTGGACGAAGTGGCCGACCTGCCG
CTGGCCATGCAGGTCAAGCTGCTGCGTGCCATTCAGGAAAAGAAAGTACGCAAGCTGGGCAGCCCGCAAGAAGAAGCCGT
CGATGTCCGCATCATCTGCGCCACCCATAAAGACCTGGCCACGCTGGCCGACACTGGCCAGTTCCGTCAGGACTTGTATT
ACCGGCTGAATGTACTGCCACTGCGCATGCCGCCACTGCGCGAGCTGCGCGACGACATTCCACGCTTCATCGGCGCGCTG
CTCGACCGCTTCGCCACCCCAGACAACCGGCCACGGCTGACCCCGGCCGCTGTCAAGGCCATGCTGGCTTATAACTACCC
CGGCAATTTCCGCGAACTGGAAAACATCCTGGAGCGTGCCATCGCGTTGGCAGGCGACGACAAGGTCGACGTACTCGACC
TGCAACTGACGCCCTGCCCGCAGTCCGACGATGAACAGAATGCCGAATACGCCGGTAGCGAACCATTACAGGACTTCCTC
GACCGCGTAGAACGCGAGGCCATCCTCAAGGCGCTGGATGCCACCCGTTTCAACCGCACCCAGGCTGCCAAGCTGTTGGG
CCTCACCTTCCGCTCCATGCGCTACCGCATGGATAGACTGGGTATCAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(400-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.957

99.549

0.587
  pilR Acinetobacter baumannii strain A118

43.696

100

0.454
  luxO Vibrio cholerae strain A1552

37.097

97.968

0.363

Multiple sequence alignment