Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   FAY30_RS20675 Genome accession   NZ_CP039727
Coordinates   4233238..4233921 (-) Length   227 a.a.
NCBI ID   WP_149871637.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4228238..4238921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS20650 (FAY30_20650) - 4228916..4229413 (+) 498 WP_149871632.1 spore coat protein -
  FAY30_RS20655 (FAY30_20655) - 4229527..4230243 (-) 717 WP_149871633.1 ComF family protein -
  FAY30_RS20660 (FAY30_20660) - 4230344..4231831 (-) 1488 WP_149871634.1 DEAD/DEAH box helicase -
  FAY30_RS20665 (FAY30_20665) - 4231816..4232007 (-) 192 WP_149871635.1 hypothetical protein -
  FAY30_RS20670 (FAY30_20670) - 4232265..4233104 (-) 840 WP_149871636.1 DegV family protein -
  FAY30_RS20675 (FAY30_20675) degU 4233238..4233921 (-) 684 WP_149871637.1 response regulator Regulator
  FAY30_RS20680 (FAY30_20680) degS 4233983..4235119 (-) 1137 WP_149871638.1 sensor histidine kinase Regulator
  FAY30_RS20685 (FAY30_20685) - 4235375..4236013 (+) 639 WP_149871639.1 YigZ family protein -
  FAY30_RS20690 (FAY30_20690) - 4236284..4237348 (-) 1065 WP_149871640.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25353.16 Da        Isoelectric Point: 6.3014

>NTDB_id=360478 FAY30_RS20675 WP_149871637.1 4233238..4233921(-) (degU) [Bacillus sp. S3]
MTTKIVIIDDHQLFREGVKRILEFEKAFQVVAEGDDGSEALGLVQEHQPDVVIMDINMPQMNGVEATRELIEKFPNTKVI
ILSIHDDENYVTHALKTGACGYLLKEMDADALIEAVRVVAEGGSYLHPKVTHNLVNEYRKLAAGVARGGGYVQTVEIRRP
LHLLTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEVR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=360478 FAY30_RS20675 WP_149871637.1 4233238..4233921(-) (degU) [Bacillus sp. S3]
TTGACTACTAAAATTGTGATAATAGACGATCATCAACTATTCAGAGAAGGCGTTAAGAGAATACTAGAATTTGAAAAAGC
GTTCCAAGTCGTGGCAGAAGGCGATGACGGTAGCGAGGCATTAGGACTTGTTCAAGAGCACCAGCCAGATGTTGTTATCA
TGGATATTAATATGCCGCAAATGAATGGGGTTGAGGCAACCCGTGAGTTAATTGAAAAATTTCCCAATACAAAGGTCATC
ATTTTATCTATTCATGACGATGAGAACTATGTGACCCACGCATTAAAAACTGGTGCATGTGGCTATTTATTAAAGGAAAT
GGATGCAGATGCTTTGATAGAAGCCGTTCGGGTGGTGGCTGAGGGCGGATCGTATTTACATCCAAAAGTCACCCATAATT
TGGTCAATGAATACCGCAAACTGGCAGCTGGTGTTGCCCGCGGCGGCGGCTACGTTCAAACAGTCGAAATCCGTCGTCCA
TTGCATTTATTAACACGCCGCGAATGCGAAGTACTGCAAATGCTTGCTGATGGAAAAAGTAATCGAGGAATCGGCGAATC
CTTATTCATCAGTGAAAAAACTGTTAAAAACCATGTGTCAAATATTTTACAAAAAATGAACGTCAATGACCGTACACAGG
CAGTTGTTGTCGCAATTAAAAACGGCTGGGTGGAAGTACGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(163-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

82.143

98.678

0.811
  vraR Staphylococcus aureus N315

36.444

99.119

0.361

Multiple sequence alignment