Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   FAY30_RS20680 Genome accession   NZ_CP039727
Coordinates   4233983..4235119 (-) Length   378 a.a.
NCBI ID   WP_149871638.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4228983..4240119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS20655 (FAY30_20655) - 4229527..4230243 (-) 717 WP_149871633.1 ComF family protein -
  FAY30_RS20660 (FAY30_20660) - 4230344..4231831 (-) 1488 WP_149871634.1 DEAD/DEAH box helicase -
  FAY30_RS20665 (FAY30_20665) - 4231816..4232007 (-) 192 WP_149871635.1 hypothetical protein -
  FAY30_RS20670 (FAY30_20670) - 4232265..4233104 (-) 840 WP_149871636.1 DegV family protein -
  FAY30_RS20675 (FAY30_20675) degU 4233238..4233921 (-) 684 WP_149871637.1 response regulator Regulator
  FAY30_RS20680 (FAY30_20680) degS 4233983..4235119 (-) 1137 WP_149871638.1 sensor histidine kinase Regulator
  FAY30_RS20685 (FAY30_20685) - 4235375..4236013 (+) 639 WP_149871639.1 YigZ family protein -
  FAY30_RS20690 (FAY30_20690) - 4236284..4237348 (-) 1065 WP_149871640.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 43897.50 Da        Isoelectric Point: 5.1911

>NTDB_id=360479 FAY30_RS20680 WP_149871638.1 4233983..4235119(-) (degS) [Bacillus sp. S3]
MKKINMKSIDEIREEMIDTVTCSKSDIFRIGEQCRQDYDSMTTELQNIKQMMVKLIEEGNKLEEQVLEARVMLSEVSMNF
KQYTEEEVREAYERAHQLQMDLSINWQYKKQLLDKRDDLERRLIGLDKTIDRADQLISQISVVMNYLTSDLKQVGEALEN
AKAKQDFGLKIIEAQEEERKRLSREIHDGPAQMLANVIMRSDLIERVYRDKGPDEAFTEIHNYKIMVRSALYEVRRIIYD
LRPMALDDLGLVPTLRKYLQTIEEYHNQSKINFVNSGKECRLPAKYEVALFRIIQESVQNALKHANACEIKVSLEITDAA
ITVMIKDNGIGFDTSQKKPESFGMIGMRERVELLEGEITFDSKINKGTVVSIRVPLIN

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=360479 FAY30_RS20680 WP_149871638.1 4233983..4235119(-) (degS) [Bacillus sp. S3]
ATGAAAAAGATTAATATGAAGTCAATTGATGAAATTCGCGAGGAAATGATTGATACTGTAACATGCAGTAAAAGTGATAT
TTTTCGAATTGGTGAGCAATGTCGCCAAGACTATGATAGCATGACGACAGAGCTTCAAAATATCAAGCAAATGATGGTCA
AGCTAATTGAAGAGGGCAACAAGCTGGAAGAACAGGTCCTGGAAGCCCGGGTCATGCTGTCAGAAGTCAGTATGAATTTT
AAACAGTACACGGAAGAAGAGGTCCGCGAAGCCTATGAAAGGGCCCACCAGCTGCAAATGGATCTTTCTATCAACTGGCA
GTACAAAAAACAGCTTTTGGACAAGAGAGACGATCTCGAACGGCGGCTAATCGGGTTAGATAAAACCATAGACCGTGCTG
ATCAGCTCATCTCGCAAATTTCCGTGGTAATGAATTATTTAACAAGCGATTTGAAACAAGTCGGTGAAGCATTGGAAAAT
GCTAAAGCCAAACAAGACTTCGGTTTAAAAATTATTGAAGCGCAGGAAGAAGAGAGAAAGCGGCTTTCAAGGGAGATTCA
CGATGGTCCGGCGCAAATGCTGGCGAATGTCATCATGCGTTCAGATTTAATTGAACGTGTGTATCGGGATAAGGGGCCAG
ATGAGGCCTTTACCGAAATCCATAATTATAAAATAATGGTCCGTTCTGCCCTTTATGAAGTCCGCCGAATTATCTATGAC
TTGCGTCCGATGGCATTAGATGATTTAGGGCTTGTTCCTACCCTCAGAAAATATTTACAAACGATCGAAGAATATCATAA
CCAATCGAAGATTAACTTTGTGAATAGCGGCAAGGAGTGCAGGCTTCCAGCTAAGTATGAGGTCGCGCTGTTCCGTATCA
TTCAGGAGTCCGTCCAAAATGCACTCAAGCATGCAAATGCCTGTGAAATCAAGGTGAGTTTAGAAATAACTGATGCCGCT
ATTACCGTTATGATTAAGGACAACGGCATTGGTTTTGATACTTCTCAAAAGAAACCTGAGTCTTTTGGCATGATTGGCAT
GCGGGAGCGTGTCGAACTGCTTGAAGGAGAAATTACGTTCGATTCAAAAATTAACAAAGGAACCGTTGTATCAATCCGAG
TTCCATTAATCAACTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(178-246)

Sensor protein DegS (DegS)

(10-168)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(287-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

58.575

100

0.587

Multiple sequence alignment