Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FAZ90_RS01340 Genome accession   NZ_CP039700
Coordinates   288172..288804 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 283172..293804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS01325 (FAZ90_01325) astA 284475..285494 (+) 1020 WP_016767993.1 arginine N-succinyltransferase -
  FAZ90_RS01330 (FAZ90_01330) astD 285534..286991 (+) 1458 WP_016783702.1 succinylglutamate-semialdehyde dehydrogenase -
  FAZ90_RS01335 (FAZ90_01335) - 287203..287994 (+) 792 WP_016788477.1 DUF1338 domain-containing protein -
  FAZ90_RS01340 (FAZ90_01340) crp 288172..288804 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  FAZ90_RS01345 (FAZ90_01345) - 289044..289913 (-) 870 WP_010435210.1 phosphoribulokinase -
  FAZ90_RS01350 (FAZ90_01350) - 289991..290203 (-) 213 WP_010435208.1 YheU family protein -
  FAZ90_RS01355 (FAZ90_01355) - 290295..291302 (-) 1008 WP_010435205.1 hydrolase -
  FAZ90_RS01360 (FAZ90_01360) - 291574..292044 (-) 471 WP_010435202.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=360165 FAZ90_RS01340 WP_004729651.1 288172..288804(-) (crp) [Vibrio cyclitrophicus strain ECSMB14105]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=360165 FAZ90_RS01340 WP_004729651.1 288172..288804(-) (crp) [Vibrio cyclitrophicus strain ECSMB14105]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATTGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTAATGCGTCTATCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTAACTGGTCGTATCGCACAAACGCTACTAAACCTAGCAAAACAACCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGCCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATATGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment