Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   E4167_RS19745 Genome accession   NZ_CP039631
Coordinates   4292054..4294270 (+) Length   738 a.a.
NCBI ID   WP_155678219.1    Uniprot ID   A0A5Q2U8I4
Organism   Pseudomonas veronii strain Pvy     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4287054..4299270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4167_RS19730 (E4167_20485) - 4289302..4290030 (+) 729 WP_046485250.1 response regulator transcription factor -
  E4167_RS19735 (E4167_20490) - 4290017..4291387 (+) 1371 WP_046485252.1 sensor histidine kinase -
  E4167_RS19740 (E4167_20495) - 4291391..4291906 (-) 516 WP_046485254.1 DUF2062 domain-containing protein -
  E4167_RS19745 (E4167_20500) comA 4292054..4294270 (+) 2217 WP_155678219.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E4167_RS19750 (E4167_20505) exbB 4294380..4295015 (+) 636 WP_017848014.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E4167_RS19755 (E4167_20510) - 4295012..4295440 (+) 429 WP_017848013.1 biopolymer transporter ExbD -
  E4167_RS19760 (E4167_20515) lpxK 4295440..4296450 (+) 1011 WP_046485258.1 tetraacyldisaccharide 4'-kinase -
  E4167_RS19765 (E4167_20520) - 4296474..4296659 (+) 186 WP_003174668.1 Trm112 family protein -
  E4167_RS19770 (E4167_35805) kdsB 4296656..4297417 (+) 762 Protein_3891 3-deoxy-manno-octulosonate cytidylyltransferase -
  E4167_RS19775 (E4167_35810) - 4297421..4297885 (+) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  E4167_RS19780 (E4167_20530) murB 4297882..4298904 (+) 1023 WP_155678220.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79942.48 Da        Isoelectric Point: 10.0135

>NTDB_id=360115 E4167_RS19745 WP_155678219.1 4292054..4294270(+) (comA) [Pseudomonas veronii strain Pvy]
MFALALGLLALRFLPALPPAGMLLALALVALMLLPFRTYPLAFFLFGLCWACVSAQWALDDRLRPPLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAXERDAVRQRLMAVDAQGREAGLAALVLGDGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAA
LARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASL
QPGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGT
ALLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAEVPMGYWLVSLVGAVLLLLPKGVPFRLLGWPMLLLAVFPP
REPVPHGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAAV
ARVLSIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHIQANGERLLLTGDIDRAAEQAF
LASTLAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGTQVYDSAEQGAVRLRLGAF
APPIVARSQRRFWREALP

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=360115 E4167_RS19745 WP_155678219.1 4292054..4294270(+) (comA) [Pseudomonas veronii strain Pvy]
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGCCTGCCGGGATGCTGTTGGCCCTGGC
CCTGGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGCGCAGTGGGCGCTGGATGACCGCTTGCGTCCGCCGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGACAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGCAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GGCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGTGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAACGCTNNTGAGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGG
GCGCGAGGCGGGGTTGGCGGCCCTGGTGCTGGGGGACGGCTCCGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACA
CCGGCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTACGCGCTCGTCGCCGCT
CTGGCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCGTGTGGCCTGGCGTTTACCGCGGCGTTGGG
GTACGGCTTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGC
GTTTCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGCGTGCTGATCCTTGAACCCTTGGCCAGCTTG
CAGCCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGACGCTGGAGTGC
TTGGCAGGCATGGACCCGTCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTGCTGGTGCTGGGTTTGCCCATCA
GCCTCAGTGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACG
GCATTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGTGCGCTGGACGGCTTGTTCAACGCCCT
GGCGCTGCTGGCGGGGCAATTGCCCGCGTGGATACCGGCCGAGGTGCCCATGGGCTATTGGCTGGTTAGCCTGGTCGGTG
CGGTGTTGCTGTTGCTGCCCAAGGGTGTGCCGTTTCGGTTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCG
CGCGAGCCGGTGCCCCACGGGCAGGTGGACGTACTGCAGCTGGATGTCGGGCAGGGGCTGGCGTTGATCCTGCGCACCCG
CCATCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGA
AGAGGCTCGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCATGCAGGCGGTGCGGCGGCTGTC
GCCCGTGTGCTGTCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTAT
CAGCGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTGTGGCAATGGCCAGACGCAGTTGATGGCAACCCCAAAT
CCTGTGTATTGCACATACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCAGAGCAGGCGTTT
CTGGCCTCGACCCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTT
TCTGCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAGGTGG
TGGAGCGCTATCAAGCGTTGGGAACGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTT
GCGCCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-662)

Domain of unknown function (DUF4131) (DUF4131)

(19-163)

Competence protein (Competence)

(195-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.362

97.425

0.588
  comA Ralstonia pseudosolanacearum GMI1000

35.032

100

0.373

Multiple sequence alignment