Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   E4167_RS19750 Genome accession   NZ_CP039631
Coordinates   4294380..4295015 (+) Length   211 a.a.
NCBI ID   WP_017848014.1    Uniprot ID   A0A1D3JW30
Organism   Pseudomonas veronii strain Pvy     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4289380..4300015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4167_RS19735 (E4167_20490) - 4290017..4291387 (+) 1371 WP_046485252.1 sensor histidine kinase -
  E4167_RS19740 (E4167_20495) - 4291391..4291906 (-) 516 WP_046485254.1 DUF2062 domain-containing protein -
  E4167_RS19745 (E4167_20500) comA 4292054..4294270 (+) 2217 WP_155678219.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E4167_RS19750 (E4167_20505) exbB 4294380..4295015 (+) 636 WP_017848014.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E4167_RS19755 (E4167_20510) - 4295012..4295440 (+) 429 WP_017848013.1 biopolymer transporter ExbD -
  E4167_RS19760 (E4167_20515) lpxK 4295440..4296450 (+) 1011 WP_046485258.1 tetraacyldisaccharide 4'-kinase -
  E4167_RS19765 (E4167_20520) - 4296474..4296659 (+) 186 WP_003174668.1 Trm112 family protein -
  E4167_RS19770 (E4167_35805) kdsB 4296656..4297417 (+) 762 Protein_3891 3-deoxy-manno-octulosonate cytidylyltransferase -
  E4167_RS19775 (E4167_35810) - 4297421..4297885 (+) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  E4167_RS19780 (E4167_20530) murB 4297882..4298904 (+) 1023 WP_155678220.1 UDP-N-acetylmuramate dehydrogenase -
  E4167_RS19785 (E4167_20535) - 4298978..4299649 (-) 672 WP_017848008.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22868.02 Da        Isoelectric Point: 7.3613

>NTDB_id=360116 E4167_RS19750 WP_017848014.1 4294380..4295015(+) (exbB) [Pseudomonas veronii strain Pvy]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=360116 E4167_RS19750 WP_017848014.1 4294380..4295015(+) (exbB) [Pseudomonas veronii strain Pvy]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCTTGCGCGCCAGCCGTGTCACGCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAGCTGCGTGCCAATTCACCCCTGGGTGAAATCCTCGCGGCCGGGCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCGGCGCGGGTCATCCATGAGCTGGAGCGTTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCACCGTTGCTCGGCCTGCTGGGCACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCGCGGGCATGAGCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCCTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGGATCGATGAACTGGTTGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACTTGGTCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D3JW30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment