Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MS6193_RS14275 Genome accession   NZ_CP047405
Coordinates   2934314..2935051 (+) Length   245 a.a.
NCBI ID   WP_147716860.1    Uniprot ID   -
Organism   Escherichia coli strain MS6193     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2929314..2940051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS6193_RS14260 (MS6193_02902) clpC 2929768..2932341 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  MS6193_RS14265 (MS6193_02903) yfiH 2932471..2933202 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  MS6193_RS14270 (MS6193_02904) rluD 2933199..2934179 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MS6193_RS14275 (MS6193_02905) comL 2934314..2935051 (+) 738 WP_147716860.1 outer membrane protein assembly factor BamD Machinery gene
  MS6193_RS14280 (MS6193_02906) raiA 2935322..2935663 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MS6193_RS14285 pheL 2935767..2935814 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MS6193_RS14290 (MS6193_02908) pheA 2935913..2937073 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  MS6193_RS14295 (MS6193_02909) tyrA 2937116..2938237 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MS6193_RS14300 (MS6193_02910) aroF 2938248..2939318 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MS6193_RS14305 (MS6193_02911) yfiL 2939528..2939893 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27847.43 Da        Isoelectric Point: 6.4874

>NTDB_id=359527 MS6193_RS14275 WP_147716860.1 2934314..2935051(+) (comL) [Escherichia coli strain MS6193]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQMDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=359527 MS6193_RS14275 WP_147716860.1 2934314..2935051(+) (comL) [Escherichia coli strain MS6193]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGATGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371