Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   GTP13_RS22155 Genome accession   NZ_CP047378
Coordinates   4305303..4306040 (+) Length   245 a.a.
NCBI ID   WP_096317620.1    Uniprot ID   -
Organism   Escherichia coli strain CAU16175     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4300303..4311040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTP13_RS22140 clpC 4300757..4303330 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  GTP13_RS22145 yfiH 4303460..4304191 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  GTP13_RS22150 rluD 4304188..4305168 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GTP13_RS22155 comL 4305303..4306040 (+) 738 WP_096317620.1 outer membrane protein assembly factor BamD Machinery gene
  GTP13_RS22160 raiA 4306311..4306652 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  GTP13_RS22165 pheL 4306756..4306803 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  GTP13_RS22170 pheA 4306902..4308062 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  GTP13_RS22175 tyrA 4308105..4309226 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  GTP13_RS22180 aroF 4309237..4310307 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  GTP13_RS22185 yfiL 4310517..4310882 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27845.40 Da        Isoelectric Point: 6.4874

>NTDB_id=359457 GTP13_RS22155 WP_096317620.1 4305303..4306040(+) (comL) [Escherichia coli strain CAU16175]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGSWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=359457 GTP13_RS22155 WP_096317620.1 4305303..4306040(+) (comL) [Escherichia coli strain CAU16175]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCTCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371