Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   E8M05_RS03305 Genome accession   NZ_CP039457
Coordinates   595558..597360 (+) Length   600 a.a.
NCBI ID   WP_013851608.1    Uniprot ID   A0AAW6YFF3
Organism   Streptococcus pasteurianus strain WUSP067     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 590558..602360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M05_RS03280 (E8M05_03275) queA 591215..592243 (-) 1029 WP_048791498.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  E8M05_RS03285 (E8M05_03280) - 592419..592919 (+) 501 WP_003063844.1 VIT1/CCC1 transporter family protein -
  E8M05_RS03290 (E8M05_03285) nagB 593047..593751 (+) 705 WP_041972899.1 glucosamine-6-phosphate deaminase -
  E8M05_RS03295 (E8M05_03290) - 593827..594543 (+) 717 WP_013851606.1 pseudouridine synthase -
  E8M05_RS03300 (E8M05_03295) - 594597..595568 (+) 972 WP_013851607.1 competence protein CoiA -
  E8M05_RS03305 (E8M05_03300) pepF 595558..597360 (+) 1803 WP_013851608.1 oligoendopeptidase F Regulator
  E8M05_RS03310 (E8M05_03305) - 597433..597951 (+) 519 WP_013851609.1 GNAT family N-acetyltransferase -
  E8M05_RS03315 (E8M05_03310) - 597973..598584 (+) 612 WP_003063855.1 HAD-IA family hydrolase -
  E8M05_RS03320 (E8M05_03315) - 598638..599339 (+) 702 WP_013851610.1 O-methyltransferase -
  E8M05_RS03325 (E8M05_03320) - 599409..600470 (+) 1062 WP_048791500.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68935.96 Da        Isoelectric Point: 4.5970

>NTDB_id=358787 E8M05_RS03305 WP_013851608.1 595558..597360(+) (pepF) [Streptococcus pasteurianus strain WUSP067]
MSDNRSHIDEKYQWDLSTVFATDDAWEAELASLDSDLENAKAYKGRLTASSNDLLAITESYLALSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKEAFEDFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFGLLDNADIIFPIVPDDEGKEIQLTHGNFISLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLKMYDIHTPLSEMDMSFTYEEALV
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKTDNLEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQADIDRYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEALIEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=358787 E8M05_RS03305 WP_013851608.1 595558..597360(+) (pepF) [Streptococcus pasteurianus strain WUSP067]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACCAATGGGATTTAAGCACAGTTTTTGCTACAGATGATGCTTGGGA
AGCGGAGCTGGCTAGTCTTGATAGTGATTTAGAAAATGCTAAAGCTTACAAAGGACGTTTGACAGCGTCAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTGCCTTGTCGCGTCGTTTGGAGAAGCTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATACCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAGTTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTGATGCAATTGTCTAAAGAAGCTTTTGAGGATTTCGTGGCAGAAACACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAACTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTATTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGGGCTTTTGGATAATGCTGACATCATTTTTCCAATCGTTCCAGATGA
TGAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTAGCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAATGTCAAAGTGCAT
AACTATGAAGCGCGTGTTCATCATTTTAAATCAGCACGTGAGGCAGCACTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCTTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGTTACGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAAAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTACCTATGAAGAAGCTTTGGTA
AAAGCTGAAGATGTCTTGGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCCTACTCTGGTGGTTCGTATGATACGAATGCTTTCATGCTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACAGGGCACAGCTTGCATTCGACATTTACACGTGAAAAT
CAACCCTATGTTTATGGAGATTACAGTATTTTCTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGTTTCAAGAGTACCATTT
TCCGCCAAGCACAATTTGCGGAATTTGAAGATATCATTCATAAGGCAGACCAAGCTGGAGAAGTGTTGACGAGTGATTAC
CTCAACCAACTTTATGCCGACTTAAACGAGAAATATTATGGACTCAGCAAAACAGACAACCTAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCCACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGGTTGTTCACGGTACACAAGCTGATATTGACCGCTACCTTGATTATCTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATCAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTTGAGGAACGCTT
GGATGAGTTGGAAGCTTTAATTGAAAAAGGAGCACATCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.333

100

0.703

Multiple sequence alignment