Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   GRT08_RS08745 Genome accession   NZ_CP047234
Coordinates   1720475..1722352 (+) Length   625 a.a.
NCBI ID   WP_038463888.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1715475..1727352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS08730 (GRT08_08615) ymcA 1716525..1716956 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  GRT08_RS08735 (GRT08_08620) cotE 1717210..1717755 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  GRT08_RS08740 (GRT08_08625) hexA 1717874..1720459 (+) 2586 WP_101563151.1 DNA mismatch repair protein MutS Machinery gene
  GRT08_RS08745 (GRT08_08630) hexB 1720475..1722352 (+) 1878 WP_038463888.1 DNA mismatch repair endonuclease MutL Machinery gene
  GRT08_RS08750 (GRT08_08635) - 1722574..1722783 (-) 210 WP_071391815.1 hypothetical protein -
  GRT08_RS08755 (GRT08_08640) - 1723853..1724530 (+) 678 WP_071391814.1 MBL fold metallo-hydrolase -
  GRT08_RS08760 (GRT08_08645) fabD 1724845..1725714 (+) 870 WP_071391813.1 ACP S-malonyltransferase -
  GRT08_RS08765 (GRT08_08650) - 1725851..1726825 (+) 975 WP_071391812.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70189.39 Da        Isoelectric Point: 6.0182

>NTDB_id=358349 GRT08_RS08745 WP_038463888.1 1720475..1722352(+) (hexB) [Bacillus amyloliquefaciens strain FJ4]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIEEESLTDEAGHG
VPPKIGMPVTEAPVSDIPEPEVEADSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQV
EPEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKK
LREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=358349 GRT08_RS08745 WP_038463888.1 1720475..1722352(+) (hexB) [Bacillus amyloliquefaciens strain FJ4]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTCTCAAATAAAATTGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGTATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGCAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACAGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTCGTCAACCGGATTGCTCTTGCGCATCCGGAAGTATCCATCCG
TCTCCGCCATCAAGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTCCCGATAGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAACGGCTTATTCCGAGCGCCCAGCTACCGAAAAAATCAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCTGAGCCGTCTTACTCAC
CGATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGGTCATAGAAGAAGAGTCCCTGACCGATGAAGCAGGTCACGGA
GTGCCGCCGAAGATCGGCATGCCGGTAACGGAAGCGCCTGTTTCCGATATTCCGGAGCCTGAAGTGGAGGCTGACTCTGA
AGAAATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAA
ACGGCTTGTATATCATTGACCAGCATGCGGCGCAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTC
GAGCCTGAAGTACAGGATATGATCGTGCCGCTCACCTTTCATTATGCGGCAAATGAAGCGCTGATCATTGACCAGCATCA
GCATGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGT
TTCCAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAA
CTGCGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGCGCAACGACGAAATCAA
AGCGCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCATCACAGTA
CGTATGAGATGGAGAAAATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)

MutL C terminal dimerisation domain (MutL_C)

(440-581)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.958

100

0.482

Multiple sequence alignment