Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   GRT08_RS08730 Genome accession   NZ_CP047234
Coordinates   1716525..1716956 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711525..1721956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS08710 (GRT08_08595) spoVS 1712096..1712356 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  GRT08_RS08715 (GRT08_08600) tdh 1712613..1713659 (+) 1047 WP_043867101.1 L-threonine 3-dehydrogenase -
  GRT08_RS08720 (GRT08_08605) - 1713672..1714850 (+) 1179 WP_029325912.1 glycine C-acetyltransferase -
  GRT08_RS08725 (GRT08_08610) miaB 1714993..1716522 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GRT08_RS08730 (GRT08_08615) ymcA 1716525..1716956 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  GRT08_RS08735 (GRT08_08620) cotE 1717210..1717755 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  GRT08_RS08740 (GRT08_08625) hexA 1717874..1720459 (+) 2586 WP_101563151.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=358347 GRT08_RS08730 WP_003154113.1 1716525..1716956(+) (ymcA) [Bacillus amyloliquefaciens strain FJ4]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=358347 GRT08_RS08730 WP_003154113.1 1716525..1716956(+) (ymcA) [Bacillus amyloliquefaciens strain FJ4]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAGATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment