Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   GSF12_RS06795 Genome accession   NZ_CP047226
Coordinates   1495186..1497303 (-) Length   705 a.a.
NCBI ID   WP_036598342.1    Uniprot ID   -
Organism   Moraxella osloensis strain YV1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1490186..1502303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS06785 (GSF12_06785) pepN 1491472..1494087 (-) 2616 WP_228274306.1 aminopeptidase N -
  GSF12_RS06790 (GSF12_06790) - 1494189..1495145 (-) 957 WP_201450367.1 hypothetical protein -
  GSF12_RS06795 (GSF12_06795) uvrB 1495186..1497303 (-) 2118 WP_036598342.1 excinuclease ABC subunit UvrB Machinery gene
  GSF12_RS06800 (GSF12_06800) metK 1497744..1498910 (+) 1167 WP_159374903.1 methionine adenosyltransferase -
  GSF12_RS06805 (GSF12_06805) - 1498999..1499313 (+) 315 WP_159374904.1 DUF3144 domain-containing protein -
  GSF12_RS06810 (GSF12_06810) - 1499398..1499952 (+) 555 WP_159374905.1 hypothetical protein -
  GSF12_RS06815 (GSF12_06815) - 1500108..1500464 (-) 357 WP_159374906.1 hypothetical protein -
  GSF12_RS06820 (GSF12_06820) prpB 1500838..1501731 (+) 894 WP_036598327.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 80117.31 Da        Isoelectric Point: 5.5973

>NTDB_id=358174 GSF12_RS06795 WP_036598342.1 1495186..1497303(-) (uvrB) [Moraxella osloensis strain YV1]
MRPPQSSRSERELSQLARQIQDDAQITGVNASGTQISSKPFEMVTEFEPSGDQPQAIAKLVDGIERGMHGQLLLGVTGSG
KTYTMAKVISQCQRPTIIMAHNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL
SATRALLERRDAIIIASVSCIYGLGDPESYLKMLLHIVVGDKIDRTAMLKRLVELQYTRNELDFGRGTYRLRGEVLDIYP
AESEQLAVRISMFDDEVEKITWFDPLTGKNVRSVPRITIYPKSHYVTPRDKLERASGTIKAELEQRLEYFRAHDKLIEAQ
RIKERTTYDLEMIQQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQVGAMYKGDRSRKETLVNY
GFRLPSAMDNRPLMFEEWERITPATIFVSATPAQYELEHSEQVVEQVVRPTGLVDPQLEIRPVLTQVDDVLSEINIRKAK
DERVLITTLTKRMAEDLTSYLKEYNIKVAYLHSDIDTVERMKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADK
EGFLRSERSLIQTIGRAARHVNGKAILYADSITPSMQKAIEETERRRAKQMAYNEEHGITPTSARRQITDKIDTGEAEAP
NDNQAIAVTHAFPDVDISILRSPDLLAKEIARLEKEMKALSRDLKFEEAAKVRDKVVSLREFVLQ

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=358174 GSF12_RS06795 WP_036598342.1 1495186..1497303(-) (uvrB) [Moraxella osloensis strain YV1]
ATGCGACCACCTCAATCTTCCCGCTCCGAACGTGAACTTAGCCAACTTGCCCGCCAAATCCAAGATGATGCCCAAATCAC
CGGTGTCAATGCCAGTGGCACCCAAATCTCAAGTAAACCCTTTGAGATGGTGACCGAATTTGAACCCTCAGGCGACCAAC
CGCAAGCGATTGCCAAATTGGTTGACGGCATTGAGCGCGGCATGCACGGTCAGCTGCTCTTGGGGGTGACAGGCTCAGGT
AAAACCTACACCATGGCAAAAGTGATTTCCCAATGCCAGCGTCCCACCATTATCATGGCACACAACAAAACCCTTGCCGC
CCAGCTATATGGCGAGTTTAAGGCGTTCTTTCCCCACAATGCTGTGGAGTATTTTGTTAGTTATTACGACTATTATCAGC
CTGAAGCGTATGTACCTGCCAGTGATACCTTTATCGAAAAAGACAGCGCCATTAACGACCATATCGACCAAATGCGACTG
TCCGCCACGCGTGCGCTACTCGAACGTCGTGATGCCATTATCATTGCATCAGTGTCTTGTATCTATGGTCTCGGTGACCC
AGAAAGCTACCTAAAAATGCTCCTCCACATTGTAGTGGGCGACAAAATCGACCGCACTGCCATGCTCAAACGCTTGGTGG
AGCTGCAATATACGCGTAACGAGCTTGACTTTGGGCGAGGTACTTACCGCTTGCGTGGCGAAGTGCTGGATATTTACCCA
GCTGAGTCTGAACAGCTAGCGGTGCGTATCAGTATGTTTGATGATGAAGTGGAAAAAATCACTTGGTTTGACCCGTTGAC
AGGCAAGAACGTGCGCAGTGTGCCACGCATTACCATCTATCCAAAATCACACTACGTCACCCCACGAGACAAGTTAGAAA
GAGCCAGTGGCACTATTAAAGCCGAGCTTGAACAACGCCTTGAGTATTTTCGAGCGCATGACAAACTGATTGAAGCACAG
CGTATCAAAGAACGCACCACTTATGATTTGGAAATGATTCAACAGCTTGGCTACTGTAACGGTATTGAGAACTATTCGCG
CCATTTATCGGGACGTCCTGCGGGTGAAGCACCGCCGACGTTGTTTGACTATATTCCGCCCGATGCCTTGCTATTTATTG
ATGAAAGCCATGTAACCGTGCCACAAGTCGGCGCGATGTACAAAGGCGATAGAAGTCGTAAAGAAACCTTGGTCAATTAT
GGCTTTCGCCTGCCGTCTGCGATGGATAACCGCCCGCTGATGTTTGAAGAATGGGAGCGTATTACCCCTGCGACCATTTT
TGTGTCAGCGACCCCTGCCCAATACGAGCTTGAGCATAGCGAGCAGGTCGTAGAGCAAGTGGTACGTCCGACCGGTCTAG
TGGATCCACAGCTTGAGATTCGTCCTGTCTTGACCCAAGTTGATGATGTGCTATCAGAAATCAACATTCGTAAAGCCAAA
GATGAGCGAGTGCTGATTACCACGCTCACCAAACGCATGGCAGAAGATTTGACCAGTTATCTAAAAGAGTACAATATCAA
AGTCGCTTATTTGCACTCGGATATTGACACGGTGGAGCGGATGAAAATCATCCACGAACTGCGTACAGGCGTGCATGATG
TGCTAGTCGGTATCAACCTATTGCGTGAGGGTTTGGATATGCCTGAGGTGAGCTTAGTGGCGATTTTTGATGCGGATAAA
GAAGGCTTTTTACGCTCGGAGCGTTCGCTCATTCAGACCATTGGTCGTGCTGCGCGCCATGTCAATGGTAAGGCGATTTT
GTACGCTGACAGCATTACCCCAAGTATGCAAAAGGCGATTGAAGAAACTGAGCGTCGCCGTGCCAAACAGATGGCATATA
ACGAAGAACATGGTATCACGCCGACGTCCGCTCGCCGTCAGATTACCGACAAAATCGACACAGGCGAGGCAGAAGCCCCG
AATGATAACCAAGCGATTGCGGTCACCCATGCGTTCCCCGATGTGGATATTTCGATTTTGCGTTCGCCTGATTTGCTTGC
CAAAGAGATTGCACGGCTAGAAAAAGAGATGAAAGCCTTGTCGCGTGATTTGAAGTTTGAGGAAGCGGCAAAAGTGCGCG
ATAAAGTAGTAAGTTTACGGGAATTTGTTTTACAGTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(47-123)

Ultra-violet resistance protein B (UvrB)

(587-628)

UvrB interaction domain (UvrB_inter)

(195-285)

UvrB/uvrC motif (UVR)

(668-701)

Helicase conserved C-terminal domain (Helicase_C)

(473-579)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.287

94.752

0.533
  uvrB Streptococcus pneumoniae R6

56.287

94.752

0.533
  uvrB Streptococcus pneumoniae D39

56.287

94.752

0.533

Multiple sequence alignment