Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GSF12_RS03025 Genome accession   NZ_CP047226
Coordinates   652318..652989 (+) Length   223 a.a.
NCBI ID   WP_159374324.1    Uniprot ID   -
Organism   Moraxella osloensis strain YV1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 647318..657989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS03005 (GSF12_03005) - 647356..650082 (-) 2727 WP_159374321.1 penicillin-binding protein 1A -
  GSF12_RS03010 (GSF12_03010) - 650240..650740 (-) 501 WP_159374277.1 IS630 family transposase -
  GSF12_RS03015 (GSF12_03015) - 650773..651153 (-) 381 WP_159374322.1 helix-turn-helix domain-containing protein -
  GSF12_RS03020 (GSF12_03020) pilM 651266..652318 (+) 1053 WP_159374323.1 pilus assembly protein PilM Machinery gene
  GSF12_RS03025 (GSF12_03025) pilN 652318..652989 (+) 672 WP_159374324.1 PilN domain-containing protein Machinery gene
  GSF12_RS03030 (GSF12_03030) comO/pilO 652992..653753 (+) 762 WP_201450424.1 type 4a pilus biogenesis protein PilO Machinery gene
  GSF12_RS03035 (GSF12_03035) comL/pilP 653740..654273 (+) 534 WP_159374325.1 pilus assembly protein PilP Machinery gene
  GSF12_RS03040 (GSF12_03040) comQ/pilQ 654291..656624 (+) 2334 WP_159374326.1 type IV pilus secretin family protein Machinery gene
  GSF12_RS03045 (GSF12_03045) - 656733..657269 (+) 537 WP_159374327.1 shikimate kinase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24774.31 Da        Isoelectric Point: 9.6204

>NTDB_id=358156 GSF12_RS03025 WP_159374324.1 652318..652989(+) (pilN) [Moraxella osloensis strain YV1]
MAKINLLPWRQELRERRNREFMTLVVAVLFLSLLGAFAAWSYYKNTLENQQLANERIKQENANLDKALKEIETLEQQRDD
IIARMKVIQDLQGRRPVPVRIWDDIARIIPAQMYLTSMKREADTITFTGQADNPNVISTFIRSLDGTQWLEKSAVVSIQQ
PNAVAYQASKPAPAAGNISASSTSATLPEANYVTFVVTTMVKQTDVASATAASGVAASASKEK

Nucleotide


Download         Length: 672 bp        

>NTDB_id=358156 GSF12_RS03025 WP_159374324.1 652318..652989(+) (pilN) [Moraxella osloensis strain YV1]
ATGGCAAAGATTAATTTACTTCCTTGGCGTCAAGAACTTCGTGAACGTAGAAACCGTGAGTTTATGACTTTAGTGGTTGC
GGTATTGTTTTTATCGTTACTCGGTGCCTTTGCAGCATGGAGTTACTATAAAAATACCCTAGAAAACCAGCAACTTGCTA
ATGAACGCATCAAACAAGAAAACGCTAATTTGGACAAGGCGTTAAAAGAAATCGAAACCCTTGAGCAGCAGCGTGATGAT
ATCATTGCGCGTATGAAAGTGATTCAAGACTTGCAAGGTCGTCGCCCTGTCCCTGTTCGTATTTGGGACGATATTGCCAG
AATTATCCCCGCACAAATGTATTTAACCAGCATGAAGCGTGAAGCTGATACCATCACCTTTACCGGTCAAGCCGACAACC
CGAATGTGATTTCAACATTTATACGCAGTCTTGATGGAACCCAGTGGTTAGAAAAATCGGCGGTGGTCAGTATACAGCAG
CCCAATGCAGTGGCTTATCAAGCCTCCAAACCCGCACCCGCTGCCGGTAACATCAGCGCTAGCAGTACCAGCGCAACATT
ACCAGAAGCCAATTACGTGACTTTTGTGGTAACAACCATGGTTAAGCAAACCGACGTCGCCAGTGCCACCGCTGCAAGTG
GCGTTGCAGCAAGTGCGAGTAAGGAGAAATAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

38.326

100

0.39