Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GSF12_RS00890 Genome accession   NZ_CP047226
Coordinates   199037..200320 (-) Length   427 a.a.
NCBI ID   WP_159374046.1    Uniprot ID   -
Organism   Moraxella osloensis strain YV1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 194037..205320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS00855 (GSF12_00855) - 194269..194739 (+) 471 WP_159374040.1 flavodoxin family protein -
  GSF12_RS00860 (GSF12_00860) yegQ 194850..196295 (+) 1446 WP_159374041.1 tRNA 5-hydroxyuridine modification protein YegQ -
  GSF12_RS00865 (GSF12_00865) - 196342..196749 (+) 408 WP_159374042.1 hypothetical protein -
  GSF12_RS00870 (GSF12_00870) - 196813..197070 (+) 258 WP_050324926.1 YfhL family 4Fe-4S dicluster ferredoxin -
  GSF12_RS00875 (GSF12_00875) - 197186..197728 (+) 543 WP_159374043.1 hypothetical protein -
  GSF12_RS00880 (GSF12_00880) - 197790..198365 (+) 576 WP_159374044.1 hydrolase -
  GSF12_RS00885 (GSF12_00885) - 198402..198989 (+) 588 WP_159374045.1 HD domain-containing protein -
  GSF12_RS00890 (GSF12_00890) clpX 199037..200320 (-) 1284 WP_159374046.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  GSF12_RS00895 (GSF12_00895) clpP 200377..201051 (-) 675 WP_007117251.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  GSF12_RS00900 (GSF12_00900) tig 201203..202570 (-) 1368 WP_159374047.1 trigger factor -
  GSF12_RS00905 (GSF12_00905) rdgB 202901..203551 (-) 651 WP_159374048.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  GSF12_RS00910 (GSF12_00910) - 204091..204717 (+) 627 WP_159374049.1 superoxide dismutase -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 46629.15 Da        Isoelectric Point: 4.6875

>NTDB_id=358148 GSF12_RS00890 WP_159374046.1 199037..200320(-) (clpX) [Moraxella osloensis strain YV1]
MSKNDIEPHCSFCGKAKHEVKKLIAGQDANICNECIELCDDLIAESKSSGSDVSDTNEGENWAARKLPTPKEIRSHLDEY
VIGQDKAKKTLAVAVYNHYKRLKVSEKLSEDKALTTLGADDAMVELSKSNILLIGPTGSGKTLLAQTLARLLDVPFALAD
ATTLTEAGYVGEDVENIVQKLLQAAEFDVERAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVANIPP
QGGRKHPNQEMIQVDTSNILVICGGAFAGLDNVIQQRTEKTGIGFNAEVKAKDSGKKTGELFKQVEPEDLIKFGLIPELI
GRLPVVATLEELDEEALVQILTEPKNALVKQYEYLFEMENARLSFTDDALVAIAKQALKRRTGARGLRSIVENALLDTMY
ELPSMTPGKTVTVNEAVIDNNQSPEIV

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=358148 GSF12_RS00890 WP_159374046.1 199037..200320(-) (clpX) [Moraxella osloensis strain YV1]
ATGTCAAAAAATGACATTGAGCCACACTGCTCGTTTTGTGGTAAAGCCAAACACGAAGTCAAAAAGCTAATTGCAGGTCA
AGACGCCAATATCTGTAATGAGTGTATTGAACTGTGCGATGATTTAATCGCCGAATCCAAGTCTTCAGGCAGCGACGTTA
GTGATACTAATGAGGGTGAAAACTGGGCAGCGCGCAAATTGCCAACCCCCAAAGAAATTCGCAGCCACTTAGATGAGTAT
GTCATCGGTCAAGATAAAGCCAAAAAAACTTTGGCAGTCGCGGTTTACAACCACTACAAACGCTTAAAGGTGAGTGAAAA
GCTGAGTGAAGATAAAGCGTTGACGACACTTGGCGCCGATGATGCCATGGTTGAGCTATCAAAAAGCAATATTTTGCTGA
TTGGTCCAACTGGCTCTGGTAAAACCTTACTGGCACAGACCCTTGCCCGCCTACTTGATGTCCCATTTGCGCTAGCTGAT
GCGACTACCTTGACTGAAGCGGGTTATGTCGGTGAAGATGTGGAAAACATCGTACAAAAACTGTTACAAGCGGCAGAGTT
TGATGTCGAGAGGGCGCAAAAAGGCATTATCTATATCGATGAAATTGATAAAATCAGCCGTAAAAGCGAAAACCCTTCGA
TTACCCGTGACGTGTCAGGTGAAGGCGTACAGCAAGCGCTGTTGAAACTGATTGAAGGTACGGTTGCCAATATTCCACCG
CAAGGCGGTCGTAAGCACCCAAACCAAGAGATGATTCAGGTCGATACCAGTAATATCTTGGTGATTTGTGGTGGTGCGTT
TGCTGGTCTCGACAATGTCATTCAACAGCGTACCGAAAAGACCGGTATCGGTTTTAACGCTGAGGTAAAAGCCAAAGACA
GCGGCAAAAAAACCGGTGAATTGTTCAAGCAAGTTGAGCCAGAAGATTTGATTAAATTTGGTCTGATTCCAGAGTTAATT
GGTCGTCTGCCTGTGGTAGCGACACTGGAAGAATTGGATGAAGAAGCATTGGTACAAATCTTAACCGAGCCAAAAAATGC
GCTGGTCAAACAATACGAATACTTGTTTGAAATGGAAAATGCGAGGTTATCGTTTACCGATGATGCGCTGGTGGCGATTG
CCAAACAAGCCTTAAAGCGTCGTACTGGTGCTCGCGGTCTACGCTCCATTGTTGAAAATGCGCTGCTCGATACCATGTAT
GAATTACCCTCGATGACACCCGGCAAAACCGTCACAGTCAATGAGGCAGTGATTGATAATAACCAATCGCCAGAGATTGT
TTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(332-405)

AAA domain (Cdc48 subfamily) (AAA_2)

(128-325)

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.77

98.595

0.56
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.048

97.424

0.536

Multiple sequence alignment