Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GR339_RS03715 Genome accession   NZ_CP047212
Coordinates   731943..732491 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain JZ_1_79     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 726943..737491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS03685 (GR339_03655) ctsT 726986..727291 (-) 306 WP_072240058.1 hypothetical protein Machinery gene
  GR339_RS03690 (GR339_03660) proC 727288..728025 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  GR339_RS03695 (GR339_03665) fliW 728025..728414 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  GR339_RS03700 (GR339_03670) bamD 728578..729225 (+) 648 WP_250406281.1 outer membrane protein assembly factor BamD -
  GR339_RS03705 (GR339_03675) lon 729241..731616 (+) 2376 WP_052793153.1 endopeptidase La -
  GR339_RS03710 (GR339_03680) rpsR 731672..731932 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  GR339_RS03715 (GR339_03685) ssb 731943..732491 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  GR339_RS03720 (GR339_03690) rpsF 732500..732877 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  GR339_RS09205 (GR339_03695) - 733156..734405 (+) 1250 Protein_727 MFS transporter -
  GR339_RS03735 - 735002..735175 (+) 174 WP_215445742.1 hypothetical protein -
  GR339_RS03740 (GR339_03705) - 735420..736278 (-) 859 Protein_729 VirK family antimicrobial peptide resistance protein -
  GR339_RS03745 (GR339_03710) rseP 736275..737378 (-) 1104 WP_002780260.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=358028 GR339_RS03715 WP_002777084.1 731943..732491(-) (ssb) [Campylobacter coli strain JZ_1_79]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=358028 GR339_RS03715 WP_002777084.1 731943..732491(-) (ssb) [Campylobacter coli strain JZ_1_79]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment