Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   GR339_RS03685 Genome accession   NZ_CP047212
Coordinates   726986..727291 (-) Length   101 a.a.
NCBI ID   WP_072240058.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_79     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 721986..732291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS03650 (GR339_03620) - 722401..723162 (+) 762 WP_025443303.1 ATP-binding protein -
  GR339_RS03655 (GR339_03625) - 723159..723842 (+) 684 WP_002777124.1 3-methyladenine DNA glycosylase -
  GR339_RS03660 (GR339_03630) thiD 723842..724654 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GR339_RS03665 (GR339_03635) thiE 724644..725276 (+) 633 WP_002777120.1 thiamine phosphate synthase -
  GR339_RS03670 (GR339_03640) - 725254..725883 (+) 630 WP_002780243.1 uroporphyrinogen-III synthase -
  GR339_RS03675 (GR339_03645) - 725876..726328 (-) 453 WP_002777117.1 hypothetical protein -
  GR339_RS03680 (GR339_03650) - 726325..726993 (-) 669 WP_002790524.1 hypothetical protein -
  GR339_RS03685 (GR339_03655) ctsT 726986..727291 (-) 306 WP_072240058.1 hypothetical protein Machinery gene
  GR339_RS03690 (GR339_03660) proC 727288..728025 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  GR339_RS03695 (GR339_03665) fliW 728025..728414 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  GR339_RS03700 (GR339_03670) bamD 728578..729225 (+) 648 WP_250406281.1 outer membrane protein assembly factor BamD -
  GR339_RS03705 (GR339_03675) lon 729241..731616 (+) 2376 WP_052793153.1 endopeptidase La -
  GR339_RS03710 (GR339_03680) rpsR 731672..731932 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12409.29 Da        Isoelectric Point: 6.4746

>NTDB_id=358026 GR339_RS03685 WP_072240058.1 726986..727291(-) (ctsT) [Campylobacter coli strain JZ_1_79]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTNPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=358026 GR339_RS03685 WP_072240058.1 726986..727291(-) (ctsT) [Campylobacter coli strain JZ_1_79]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATCTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCA
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475