Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   GR340_RS03700 Genome accession   NZ_CP047197
Coordinates   699427..701400 (-) Length   657 a.a.
NCBI ID   WP_277737551.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 694427..706400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS03675 (GR340_03615) - 695160..695405 (+) 246 WP_002776417.1 RNA-binding S4 domain-containing protein -
  GR340_RS03680 (GR340_03620) tsaE 695402..695809 (+) 408 WP_002781616.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GR340_RS03685 (GR340_03625) lptB 695802..696530 (+) 729 WP_277737548.1 LPS export ABC transporter ATP-binding protein -
  GR340_RS03690 (GR340_03630) - 696530..697780 (+) 1251 WP_277737549.1 RNA polymerase factor sigma-54 -
  GR340_RS03695 (GR340_03635) - 697968..699392 (+) 1425 WP_277737550.1 anaerobic C4-dicarboxylate transporter -
  GR340_RS03700 (GR340_03640) uvrB 699427..701400 (-) 1974 WP_277737551.1 excinuclease ABC subunit UvrB Machinery gene
  GR340_RS03705 (GR340_03645) - 701554..701784 (+) 231 WP_002776426.1 hypothetical protein -
  GR340_RS03710 (GR340_03650) - 701774..702019 (+) 246 WP_002776428.1 hypothetical protein -
  GR340_RS03715 (GR340_03655) Cj0683 702016..702462 (+) 447 WP_002776437.1 type II secretion system protein Machinery gene
  GR340_RS03720 (GR340_03660) - 702459..704297 (+) 1839 WP_233908780.1 primosomal protein N' -
  GR340_RS03725 (GR340_03665) - 704281..705051 (-) 771 WP_002781608.1 phosphocholine cytidylyltransferase family protein -
  GR340_RS03730 (GR340_03670) - 705048..705656 (-) 609 WP_277737552.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 76080.58 Da        Isoelectric Point: 6.5934

>NTDB_id=357966 GR340_RS03700 WP_277737551.1 699427..701400(-) (uvrB) [Campylobacter coli strain JZ_1_95]
MLELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKVKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIVINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKIEKMPANERAKIVKELRKQMLEAAKALE
FEKAATLRDEINKLKDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=357966 GR340_RS03700 WP_277737551.1 699427..701400(-) (uvrB) [Campylobacter coli strain JZ_1_95]
ATGTTAGAACTTACAAGCGATTTTAAACCAAGTCCTGATCAAGAACAAGCAATACAAGGTATTGTCAAAAGCATAAAAAA
AGGTAATAAATATCAAACCCTACTCGGCGTAACAGGAAGCGGAAAGACTTTTACCATGGCAAATGTCATAAAAGAACTCA
ATATGCCAACCCTTATCATGAGTCATAATAAAAGCCTTTGCGCCCAGCTTTATAGCGAATTTAAAGGTTTTTTTTCTAAG
AACCATGTGGAATATTTTATTTCTTATTATGATTATTATCAGCCTGAAGCTTATATACCGCGCACCGATGTTTTTATAGA
AAAAGATAGCTCCACAAATGAGGATCTAGAACGCTTAAGACTTAGCGCAACTGCTTCGCTTTTAAGCTATGAGGATGTGG
TTTGTATCGCTAGTGTCTCGGCTAATTATGGACTTGGAAATCCAAATGAATACATAGGAATGGTTTTAATCTTTGAACTA
GACATGCAAATTTCACAAAAAGAACTTTTAAAGAAACTTGTAGACATGGGTTATAAAAGAAATGATAATTTCTTTGATCG
TGCTGATTTTCGCGTACAAGGTGATATTATAGATATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGTCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGTGTAGGTGAAACAAGACTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGCGTTGAAAATTATGCAAGACATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAAATAGGAAATTTCTTGTTATAGTCGATGAAAGCCATGTTTCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACTTTGGTAGATTATGGTTTTCGTTTACCTTCAGCCTTGGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCCACACCTGCACCTTTAGAA
CTTGAACTTAGCAAAGAAAACATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTAATAGAGTTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAGCGAGTTTTAGTAACTGTAC
TGACTAAAAAACTAGCTGAAGAGCTTACAAGGTATTATTTAGAACTTGGTATTAAAGTAAAATACATGCATTCAGATATT
GATGCAATAGAACGCAATGAAATCATAAGAGGCTTAAGAAGCGGTGCTTTTGATATGTTAATAGTTATAAATTTACTTAG
AGAAGGACTTGATTTGCCTGAGGTTTCGCTTATTGCCATTATGGACGCAGATAAGGAGGGTTTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCTGCTAGAAATGTCAATGGTAAAGTTTTACTCTTTTGCAAAAAGATTACAAAATCC
ATGCAAGAAGCTATGGATACTACAAATGAGCGTCGCAAACTTCAAGAAGCTTACAATCAAAAACATAACATCACCCCAAC
TTCAGTCAAGCGACACATCGAAGAAAGTTTAAAAAATGAAGAAAACTTAGGAGAAATTTATCGCAAAGGTAAAAAAATTG
AAAAAATGCCTGCTAATGAAAGAGCTAAAATCGTAAAAGAGCTTCGTAAACAAATGCTTGAAGCTGCTAAAGCGCTCGAA
TTTGAAAAAGCAGCGACTTTAAGAGATGAGATCAATAAATTAAAAGATTTATAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

UvrB interaction domain (UvrB_inter)

(158-246)

UvrB/uvrC motif (UVR)

(623-656)

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae D39

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.305

99.848

0.502

Multiple sequence alignment