Detailed information NTG0357736

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GR131_RS07820
• Genome accession: NZ_CP047147
• Coordinates: 1902621..1903694 (+)
• Length: 357 a.a.
• NCBI ID: WP_008405566.1
• Uniprot ID: A0A126Y8M1
• Organism: Streptomyces sp. GF20
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1897621..1908694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GR131_RS07810 (GR131_07810)	-	1899136..1900398 (+)	1263	WP_003947900.1	FAD-dependent oxidoreductase	-
GR131_RS07815 (GR131_07815)	dnaG	1900519..1902423 (+)	1905	WP_026234986.1	DNA primase	-
GR131_RS07820 (GR131_07820)	rpoS	1902621..1903694 (+)	1074	WP_008405566.1	RNA polymerase sigma factor	Regulator
GR131_RS07825 (GR131_07825)	-	1903711..1903926 (-)	216	WP_159312161.1	hypothetical protein	-
GR131_RS07830 (GR131_07830)	rcrQ	1904017..1905933 (-)	1917	WP_015507929.1	ABC transporter ATP-binding protein	Regulator
GR131_RS07835 (GR131_07835)	rcrP	1905933..1907666 (-)	1734	WP_015507928.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 357 a.a.
• Molecular weight: 38792.42 Da
• Isoelectric Point: 10.3526

>NTDB_id=357736 GR131_RS07820 WP_008405566.1 1902621..1903694(+) (rpoS) [Streptomyces sp. GF20]
MQTRPPRSAPTAPPAVLAPAVPTPRRSPQRAPAGGAGTGPQGAGGRVPAGSEQAGAAAPDLFRQYLREIGRIPLLSAADE
VELARRVEAGVFAAAKLAGGCADAGLARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRA
VEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSAEKVE
EVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEE
IGRLFGVTRERVRQIESKTLRRLREHTAAGQLRGYLE

Nucleotide

• Length: 1074 bp

>NTDB_id=357736 GR131_RS07820 WP_008405566.1 1902621..1903694(+) (rpoS) [Streptomyces sp. GF20]
GTGCAGACCAGGCCCCCTCGCTCCGCCCCCACCGCTCCGCCCGCGGTCCTCGCCCCGGCCGTCCCCACCCCGCGCAGGTC
GCCCCAGCGGGCCCCGGCCGGCGGAGCCGGGACCGGGCCGCAGGGCGCGGGCGGGCGGGTACCGGCCGGATCCGAGCAGG
CGGGGGCGGCCGCCCCCGACCTCTTCCGGCAGTACCTCCGGGAGATCGGGCGCATCCCGCTGCTCTCGGCCGCCGACGAG
GTGGAGCTGGCCCGGCGCGTCGAGGCGGGCGTGTTCGCCGCGGCGAAGCTCGCCGGGGGCTGCGCGGACGCCGGTCTCGC
CCGGGACCTGCGGCGGCTGGTGGTCCTCGGGGAGCGGGCCAAGGGGCGGCTCATCGAGGCCAACCTGCGGCTCGTCGTCT
CGGTCGCCAAGCGGTACACGGGCCGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGCAATCTCGGGCTGATCCGCGCG
GTGGAGAAGTTCGACTACACCCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATACGGCAGGCGATGTCCCGCGC
CCTCGCCGACCAGGCCCGCACCATCCGGGTGCCGGTGCACGTCGTGGAGCTGATCAACCGGGTCGTGCGCACCCAGCGCG
CCCTGCTCCAGGAGGCGGGGCGCGAGCCGGCCGCCGAGGAGGTCGGTGAGCGGCTCGGGCTGAGCGCCGAGAAGGTCGAG
GAGGTGCTGCGGCTGGCCCGCGAACCCATCTCCCTGCACGCGCCGGTCGGCGGCGAGGACGACGTCTTCCTCGGCGACCT
CATCGAGGACGCCGACGCGGCCTCCCCCGCCGAGAGCGCCGCCCTGCTCCTGCTCCGCCAGCACCTCGACGCGGTCCTCG
CCACCCTCGGCGACCGCGAACGCCAGGTGGTGCAGTTGCGGTACGGGTTCGACGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGCTCTTCGGGGTCACCCGCGAACGGGTCCGCCAGATCGAGTCGAAGACGCTGCGCCGGCTCCGGGAGCACAC
GGCGGCGGGGCAGTTGCGGGGTTATCTGGAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (60-93)

• Sigma-70 region 3 (Sigma70_r3) (203-279)

• Sigma-70 region 2 (Sigma70_r2) (124-193)

• Sigma-70, region 4 (Sigma70_r4) (292-345)

3D structure

• AlphaFold DB: A0A126Y8M1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	44.863	81.793	0.367