Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GR131_RS07835 Genome accession   NZ_CP047147
Coordinates   1905933..1907666 (-) Length   577 a.a.
NCBI ID   WP_015507928.1    Uniprot ID   A0ABR4SBQ5
Organism   Streptomyces sp. GF20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900933..1912666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR131_RS07820 (GR131_07820) rpoS 1902621..1903694 (+) 1074 WP_008405566.1 RNA polymerase sigma factor Regulator
  GR131_RS07825 (GR131_07825) - 1903711..1903926 (-) 216 WP_159312161.1 hypothetical protein -
  GR131_RS07830 (GR131_07830) rcrQ 1904017..1905933 (-) 1917 WP_015507929.1 ABC transporter ATP-binding protein Regulator
  GR131_RS07835 (GR131_07835) rcrP 1905933..1907666 (-) 1734 WP_015507928.1 ABC transporter ATP-binding protein Regulator
  GR131_RS07840 (GR131_07840) - 1907800..1909254 (-) 1455 WP_008405577.1 FGGY family carbohydrate kinase -
  GR131_RS07845 (GR131_07845) - 1909344..1909643 (-) 300 WP_003947907.1 hypothetical protein -
  GR131_RS07865 (GR131_07865) - 1910352..1910804 (-) 453 WP_003947908.1 hypothetical protein -
  GR131_RS07870 (GR131_07870) - 1910886..1911770 (-) 885 WP_159312162.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62587.86 Da        Isoelectric Point: 5.6287

>NTDB_id=357738 GR131_RS07835 WP_015507928.1 1905933..1907666(-) (rcrP) [Streptomyces sp. GF20]
MLIRLLRTYLRPYQKPIALVMVLQLLQTCAALYLPSLNADIIDRGVVRGDTGVILGLGAVMLAVTLVQMAGNIGAVYFGA
RTAAALGRDVRAAVFDRVQSFSARELNGFGAPSLITRTTNDVQQVQMLALMTFTLMVTAPIMCVGGVIMALGQDVPLSGV
LLAVLPVMAASVGVVVWRLRPLFRSMQKRLDTVNRVLREQITGNRVIRAFVRDRYETERFGRANTDLTEVSLGTGRLLAL
MFPLVMLVVNLSSLAVVWFGAHRIDSGAMEIGSLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTSSSVVP
PAEPVRELAGRGTLEMRAAGFRYPGAEEWVLRDVELFAGPGETTAVIGSTGSGKTTLLGLAARLIDPVEGEVLVDGVDIR
RIDPALLARTVGLVPQKPYLFSGTVASNLRYGNPEASDEELWHALEVAQAKEFVERLEGGLEAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALRAETAEAGVVIVAQRVSTIRDADRIVVLDEGRVVAVGRHHDLMERD
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=357738 GR131_RS07835 WP_015507928.1 1905933..1907666(-) (rcrP) [Streptomyces sp. GF20]
GTGCTCATACGACTCCTGCGGACGTATCTGCGTCCGTACCAGAAACCCATCGCGCTGGTGATGGTGCTCCAACTGCTCCA
GACCTGCGCGGCCCTGTACCTTCCGTCGCTCAACGCGGACATCATCGACCGGGGCGTCGTGCGGGGCGACACGGGCGTCA
TCCTCGGGCTCGGCGCCGTCATGCTGGCGGTCACGCTGGTGCAGATGGCGGGCAACATCGGCGCCGTCTACTTCGGCGCC
CGGACCGCCGCCGCCCTCGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCACGGGAGCTGAA
CGGCTTCGGGGCACCGTCCCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACCTTCA
CGCTGATGGTGACGGCGCCCATCATGTGCGTGGGCGGCGTGATCATGGCCCTGGGCCAGGACGTACCGCTCTCCGGGGTG
CTGCTGGCGGTGCTGCCCGTGATGGCGGCCTCGGTCGGCGTGGTCGTCTGGCGGCTGCGGCCGCTCTTCCGCTCCATGCA
GAAGCGGCTGGACACCGTCAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACC
GGTACGAGACCGAGCGGTTCGGCCGGGCCAACACCGACCTGACCGAGGTCTCGCTGGGCACCGGCCGGCTGCTGGCGCTG
ATGTTCCCGCTGGTGATGCTGGTGGTGAACCTGTCCTCGCTGGCCGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CGCGATGGAGATCGGCTCGCTCACCGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTGTTGGGGACGAGCAGCAGCGTCGTCCCG
CCCGCCGAGCCGGTCCGCGAACTGGCCGGCCGGGGCACGCTGGAGATGCGGGCCGCGGGGTTCCGCTACCCGGGCGCCGA
GGAGTGGGTCCTGCGCGACGTGGAGCTGTTCGCCGGGCCCGGCGAGACCACCGCCGTCATCGGCTCGACCGGCTCCGGCA
AGACCACCCTGCTCGGCCTCGCCGCCCGCCTGATCGACCCCGTCGAGGGCGAGGTGCTGGTCGACGGCGTCGACATCCGC
CGGATCGACCCGGCGCTGCTGGCCCGCACCGTGGGCCTCGTCCCGCAGAAGCCGTACCTCTTCTCCGGCACCGTGGCGAG
CAACCTGCGGTACGGCAACCCGGAGGCGAGTGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAAGGCGGGCTGGAGGCTCCCGTCTCACAGGGCGGGACCAACGTCTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGGACCCTGGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCAGCCCTGCGCGCGGAGACCGCCGAGGCGGGCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTGGTGGCGGTCGGCCGCCACCACGACCTGATGGAACGGGAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.287

99.133

0.38

Multiple sequence alignment