Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   E6P07_RS02605 Genome accession   NZ_CP039268
Coordinates   558784..559194 (-) Length   136 a.a.
NCBI ID   WP_211363157.1    Uniprot ID   -
Organism   Thermochromatium tepidum ATCC 43061     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 553784..564194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6P07_RS02590 (E6P07_02590) - 555480..557528 (-) 2049 WP_153974168.1 methyl-accepting chemotaxis protein -
  E6P07_RS02595 (E6P07_02595) - 557628..558230 (-) 603 WP_153974169.1 chemotaxis protein CheW -
  E6P07_RS02600 (E6P07_02600) - 558223..558597 (-) 375 WP_246172982.1 response regulator -
  E6P07_RS02605 (E6P07_02605) pilG 558784..559194 (-) 411 WP_211363157.1 response regulator Regulator
  E6P07_RS02610 (E6P07_02610) gshB 559429..560439 (+) 1011 WP_153974172.1 glutathione synthase -
  E6P07_RS02615 (E6P07_02615) - 560474..561604 (+) 1131 WP_246172903.1 FAD:protein FMN transferase -
  E6P07_RS02620 (E6P07_02620) - 561601..562605 (+) 1005 WP_246172904.1 energy transducer TonB -
  E6P07_RS02625 (E6P07_02625) - 562745..563308 (+) 564 WP_153974173.1 YqgE/AlgH family protein -
  E6P07_RS02630 (E6P07_02630) ruvX 563325..563732 (+) 408 WP_153974174.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14785.11 Da        Isoelectric Point: 6.9543

>NTDB_id=357727 E6P07_RS02605 WP_211363157.1 558784..559194(-) (pilG) [Thermochromatium tepidum ATCC 43061]
MPNELDLRGTRVLIVDDSKTIRRSAETLLTKAGCEVQLAEDGFEALGKVVSFKPDLVFVDIMMPRLDGYHTCALIKNNPQ
FKDTPVVMLSSKDGLFDRAKGRLVGAQLYLSKPFTADELIGAVRASLAKASSGESP

Nucleotide


Download         Length: 411 bp        

>NTDB_id=357727 E6P07_RS02605 WP_211363157.1 558784..559194(-) (pilG) [Thermochromatium tepidum ATCC 43061]
ATGCCGAACGAACTAGATCTACGCGGCACCAGGGTTCTGATCGTCGACGACAGCAAGACCATCCGCCGCAGCGCCGAGAC
CCTGCTCACCAAGGCCGGCTGCGAGGTGCAGCTGGCCGAGGACGGCTTCGAGGCGCTGGGCAAGGTCGTCAGTTTCAAGC
CCGACCTGGTCTTCGTCGATATCATGATGCCACGGCTCGACGGCTATCACACCTGTGCCCTGATCAAGAACAACCCGCAG
TTCAAGGACACACCCGTGGTAATGCTCTCGAGTAAGGACGGACTCTTCGATCGCGCCAAGGGCCGTCTGGTCGGCGCGCA
GCTCTATCTCTCCAAGCCCTTCACCGCCGACGAGCTCATCGGTGCCGTGCGCGCCAGCCTGGCCAAAGCTTCATCCGGTG
AATCGCCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.295

89.706

0.559
  pilH Synechocystis sp. PCC 6803

45.69

85.294

0.39
  vicR Streptococcus mutans UA159

39.2

91.912

0.36

Multiple sequence alignment