Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E6A57_RS00040 | Genome accession | NZ_CP039266 |
| Coordinates | 9265..9783 (+) | Length | 172 a.a. |
| NCBI ID | WP_013085589.1 | Uniprot ID | A0A109DE21 |
| Organism | Lactobacillus crispatus strain DC21.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4265..14783
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E6A57_RS00030 (E6A57_00030) | gyrA | 6222..8702 (+) | 2481 | WP_089142922.1 | DNA gyrase subunit A | - |
| E6A57_RS00035 (E6A57_00035) | rpsF | 8919..9215 (+) | 297 | WP_005729269.1 | 30S ribosomal protein S6 | - |
| E6A57_RS00040 (E6A57_00040) | ssb | 9265..9783 (+) | 519 | WP_013085589.1 | single-stranded DNA-binding protein | Machinery gene |
| E6A57_RS00045 (E6A57_00045) | rpsR | 9811..10047 (+) | 237 | WP_003549366.1 | 30S ribosomal protein S18 | - |
| E6A57_RS00050 (E6A57_00050) | - | 10212..12233 (+) | 2022 | WP_158181610.1 | DHH family phosphoesterase | - |
| E6A57_RS00055 (E6A57_00055) | rplI | 12245..12700 (+) | 456 | WP_005721048.1 | 50S ribosomal protein L9 | - |
| E6A57_RS00060 (E6A57_00060) | dnaB | 12720..14111 (+) | 1392 | WP_158181611.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18649.18 Da Isoelectric Point: 4.7317
>NTDB_id=357710 E6A57_RS00040 WP_013085589.1 9265..9783(+) (ssb) [Lactobacillus crispatus strain DC21.1]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=357710 E6A57_RS00040 WP_013085589.1 9265..9783(+) (ssb) [Lactobacillus crispatus strain DC21.1]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.571 |
100 |
0.616 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.273 |
100 |
0.535 |