Detailed information NTG0357647

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: E5678_RS20635
• Genome accession: NZ_CP039252
• Coordinates: 4527465..4528946 (-)
• Length: 493 a.a.
• NCBI ID: WP_136180265.1
• Uniprot ID: -
• Organism: Hydrogenophaga sp. PAMC20947
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4522465..4533946

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5678_RS20625 (E5678_20610)	-	4523530..4526436 (-)	2907	WP_136180263.1	ribonucleoside-diphosphate reductase subunit alpha	-
E5678_RS20630 (E5678_20615)	ampD	4526861..4527481 (-)	621	WP_136180264.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
E5678_RS20635 (E5678_20620)	pilR	4527465..4528946 (-)	1482	WP_136180265.1	sigma-54 dependent transcriptional regulator	Regulator
E5678_RS20640 (E5678_20625)	-	4528959..4530755 (-)	1797	WP_136180266.1	ATP-binding protein	-
E5678_RS20645 (E5678_20630)	-	4530785..4531024 (-)	240	WP_136180267.1	PP0621 family protein	-
E5678_RS20650 (E5678_20635)	ccsA	4531041..4531841 (-)	801	WP_136180268.1	cytochrome c biogenesis protein CcsA	-
E5678_RS20655 (E5678_20640)	ffh	4532032..4533402 (+)	1371	WP_136180269.1	signal recognition particle protein	-

Sequence

Protein

• Length: 493 a.a.
• Molecular weight: 53572.79 Da
• Isoelectric Point: 4.8230

>NTDB_id=357647 E5678_RS20635 WP_136180265.1 4527465..4528946(-) (pilR) [Hydrogenophaga sp. PAMC20947]
MPSDQIAAILVVDDEPDLRTLYELTLLREGHDLTCAADLQEARACLAQRNFDVLITDMRLPDGLGLELLREISGQQRRET
CIVITAYGSAENAVEALKSGAFDYLTKPVDLKQLRGAVAAALQSQRQVSGGLTATQPTRAPGVPLAPAPPPSGVQALARI
VGASPAMEQIRHRIEKVSSSMAPVLILGESGTGKELVARAVHDCSHRSTGPFVAVNCGAIPDNLIEAEFFGARKGAYTGA
SQDREGYFQAAKGGTLFLDEIGDLPLAMQAKLLRVIQERRVRPLGGVQEENVDVRLVSATHRDLAALVKSGDFRQDLFYR
LNVIGLRTPPLRERREDLPLLARVLLERICNESGHPAPHLSPQAMDWLQNCELAGNVRELENLLQRALALSTGPNLEPSD
FADPSDPPPEATPDRPATSDDAPDATTEAPPDIPSDLQSFLDDQERQVLLKALKETDFNRTAAAARLGLNLRQMRYRIQR
LGIEAPTPDGDPF

Nucleotide

• Length: 1482 bp

>NTDB_id=357647 E5678_RS20635 WP_136180265.1 4527465..4528946(-) (pilR) [Hydrogenophaga sp. PAMC20947]
ATGCCTTCTGATCAAATTGCTGCCATTCTGGTCGTCGACGACGAGCCCGATCTGCGCACCCTCTACGAGCTCACCCTGTT
GCGCGAGGGTCACGACCTGACCTGCGCCGCCGATCTGCAAGAAGCCCGCGCCTGCCTGGCGCAACGCAATTTTGACGTGC
TCATCACCGACATGCGTTTGCCGGACGGCCTCGGGCTGGAGCTGTTGCGCGAAATATCAGGCCAACAACGGCGCGAAACC
TGCATCGTCATCACCGCCTATGGTTCGGCCGAAAATGCTGTCGAGGCGCTCAAATCAGGCGCCTTCGACTACCTCACCAA
ACCGGTTGACCTCAAGCAACTCCGGGGGGCCGTGGCCGCCGCGCTGCAAAGCCAGCGCCAGGTCTCAGGCGGGCTGACAG
CAACCCAGCCCACCCGGGCCCCGGGCGTGCCGCTCGCCCCGGCGCCACCACCATCAGGCGTTCAGGCACTGGCCCGCATC
GTCGGCGCCTCACCGGCGATGGAACAGATACGGCACCGGATCGAAAAAGTGTCCTCCAGCATGGCGCCGGTGCTGATCCT
TGGCGAGTCCGGGACCGGCAAGGAACTGGTGGCCCGTGCCGTGCACGACTGCAGCCACCGCTCAACAGGCCCGTTTGTCG
CGGTCAACTGTGGCGCCATCCCCGACAACCTGATCGAGGCCGAGTTCTTTGGTGCCCGCAAGGGTGCCTACACCGGCGCA
TCCCAGGACCGGGAGGGCTACTTTCAAGCGGCCAAGGGCGGCACGCTCTTCCTCGACGAAATCGGAGACCTCCCGCTGGC
CATGCAGGCCAAGCTCCTGCGCGTCATCCAGGAACGCCGGGTTCGCCCACTGGGTGGTGTGCAGGAAGAAAACGTGGACG
TGCGTCTGGTGAGCGCCACCCATCGGGATCTGGCCGCGCTGGTCAAGTCGGGCGATTTCCGGCAAGACCTGTTCTACCGC
CTCAACGTCATCGGCTTGCGCACCCCACCCCTGCGTGAGCGCCGGGAAGACCTGCCGTTGCTCGCACGCGTGTTGCTGGA
GCGCATTTGCAACGAATCGGGTCACCCGGCCCCCCACCTGTCTCCGCAGGCCATGGACTGGCTACAAAACTGTGAGTTGG
CGGGCAACGTGCGCGAGCTCGAAAACCTGCTCCAGCGAGCGCTGGCCCTGAGCACAGGCCCCAACCTCGAACCTTCGGAC
TTCGCTGATCCGTCCGATCCGCCCCCTGAAGCAACACCCGATCGCCCGGCCACGAGCGACGACGCACCCGATGCAACAAC
AGAGGCCCCGCCTGACATACCGTCAGACCTTCAATCCTTCCTCGATGACCAGGAGCGCCAGGTGCTGCTCAAGGCCCTGA
AGGAAACCGACTTCAACCGAACCGCTGCGGCGGCCAGACTGGGCCTGAACCTGCGCCAGATGCGCTACCGCATCCAGCGC
CTGGGCATCGAAGCGCCCACCCCCGATGGCGATCCATTCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (441-481)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (160-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.524	96.755	0.489
pilR	Acinetobacter baumannii strain A118	41.26	99.797	0.412