Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   DVT08_RS08920 Genome accession   NZ_CP047134
Coordinates   1971894..1973807 (-) Length   637 a.a.
NCBI ID   WP_038231414.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain IVIA5901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1966894..1978807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVT08_RS08910 (DVT08_009065) - 1968086..1969705 (-) 1620 WP_076613223.1 phosphoethanolamine transferase -
  DVT08_RS08915 (DVT08_009070) - 1969741..1970499 (-) 759 WP_004086593.1 phosphatase PAP2 family protein -
  DVT08_RS08920 (DVT08_009075) comQ/pilQ 1971894..1973807 (-) 1914 WP_038231414.1 type IV pilus secretin PilQ Machinery gene
  DVT08_RS08925 (DVT08_009080) - 1973807..1974337 (-) 531 WP_004086595.1 pilus assembly protein PilP -
  DVT08_RS08930 (DVT08_009085) - 1974334..1975002 (-) 669 WP_004086596.1 type 4a pilus biogenesis protein PilO -
  DVT08_RS08935 (DVT08_009090) - 1974999..1975664 (-) 666 WP_004086597.1 PilN domain-containing protein -
  DVT08_RS08940 (DVT08_009095) pilM 1975664..1976722 (-) 1059 WP_004086598.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 637 a.a.        Molecular weight: 69031.08 Da        Isoelectric Point: 8.9178

>NTDB_id=357484 DVT08_RS08920 WP_038231414.1 1971894..1973807(-) (comQ/pilQ) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
MIDLRDRMMTLFEVLGLRFVRRIASLRVCKIWVCIAFAWCCIPGTVSAENKQAIPVAKATNAPLSVSKIDFKRGDDGSGR
LILKFDGQGATPDLRTQGGTVLVDLGTAVLPTVLQRQINVVDFATPVQRIDAKPMGKGAQLVLSTKGAFESLAYQTGDEY
VVEIVPRKGEVAMGGAITPESVSKSAAKIYAQGYSGRPVTFNFQDVPVRTVLQLIADESNLNIVASDTVQGNVTLRLINV
PWDQALDIVLRAKGLDKRRDEKVIWVAPQQELAKYEQEKEDARIAIENREGLITDYVQINYHSATVIFKALTEAKGMGGG
GNGTPNNNSDDAFLSPRGRLVADERTNTLMISDIPKKVAQMRTLIQHIDRPVDQVLIEGRIVIATDSFARDLGAKFGVGA
ASRFSDNTATIGSNVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVT
ANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITIANFGTVPTLN
KREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLRVANATAAVH

Nucleotide


Download         Length: 1914 bp        

>NTDB_id=357484 DVT08_RS08920 WP_038231414.1 1971894..1973807(-) (comQ/pilQ) [Xylella fastidiosa subsp. multiplex strain IVIA5901]
ATGATTGATTTAAGGGATAGAATGATGACTTTATTTGAAGTCTTAGGCTTGCGTTTTGTTAGGCGTATAGCCTCGCTTCG
CGTATGTAAAATTTGGGTATGCATAGCTTTCGCTTGGTGTTGCATCCCAGGAACCGTATCGGCTGAAAACAAGCAAGCGA
TTCCAGTGGCTAAAGCTACCAATGCTCCACTAAGTGTTTCCAAAATCGATTTCAAACGTGGTGATGATGGCTCTGGCCGT
CTGATTTTGAAGTTTGATGGGCAGGGGGCCACTCCTGACCTGCGTACGCAGGGCGGCACCGTGCTGGTTGACCTGGGGAC
AGCTGTGTTGCCGACTGTCTTGCAACGCCAGATCAACGTTGTTGACTTTGCTACCCCAGTGCAGCGTATCGACGCTAAGC
CTATGGGTAAGGGTGCACAACTTGTGTTGAGCACGAAGGGAGCGTTTGAGTCGCTTGCTTACCAGACAGGGGATGAATAC
GTGGTTGAAATTGTGCCACGCAAGGGAGAGGTTGCCATGGGTGGGGCGATCACCCCAGAATCGGTCAGTAAGTCCGCAGC
GAAGATTTACGCACAAGGGTACAGTGGTCGTCCAGTAACGTTTAACTTCCAAGACGTTCCAGTACGAACGGTTTTGCAGT
TGATCGCTGATGAGTCCAACCTCAATATTGTTGCTTCCGACACTGTGCAAGGCAATGTCACTCTACGTTTGATTAATGTG
CCATGGGATCAAGCGCTCGACATCGTTTTGCGTGCTAAAGGATTGGATAAGCGCCGTGATGAGAAAGTAATTTGGGTTGC
GCCGCAACAGGAGCTTGCTAAATACGAGCAAGAAAAAGAGGACGCGCGGATCGCGATCGAAAATCGTGAGGGGTTAATTA
CCGATTATGTCCAAATAAATTATCATTCGGCCACGGTCATTTTTAAGGCGCTGACAGAAGCCAAAGGTATGGGGGGGGGA
GGTAACGGTACACCTAATAATAATAGTGATGATGCTTTCTTATCGCCACGTGGTCGGCTTGTGGCTGATGAGCGCACTAA
TACGTTGATGATTAGTGATATTCCCAAGAAAGTCGCGCAAATGCGTACTCTCATCCAGCATATTGATCGTCCTGTGGACC
AAGTGTTGATTGAGGGCCGCATCGTGATCGCCACCGATAGCTTCGCGCGTGATTTGGGGGCCAAGTTCGGTGTTGGTGCT
GCTAGCCGTTTCAGCGATAACACTGCAACGATCGGTAGTAACGTCACTACTGCTGATAGCTCCACATCGGCTACGCGGGG
GCTTAATGTTGACTTGGGCGGTCCGACCAACACCACTGCTTCAGTTCTTCCGAGTTTAGCCTACACTTTGCTTGGACCTA
AATTTAATCTAGATCTTGAGCTTTCGGCATTGCAGCAGGAATCCCGTGGCGAGGTGATTTCAAACCCTCGTATTGTCACT
GCAAACCAGCGTGAGGGATATATCAAACAAGGTAAGGAAATTGGGTATGTCACGATCACTGGAGGAGTCGCTGGTGGTCA
AGCCACTCCGAATGTCCAATTTAAAGAGGCTGTTTTGGAGTTGCGTGTGACCCCAACGATCACCAATGACAACCGTGTGT
TTCTCAACATGACTGTCAAGAAGGACGAGATCGATCAAATGATTACGATCGCCAATTTTGGTACCGTGCCGACCTTGAAC
AAGCGTGAGATCAACACTGCCGTATTGGTTGATGATGGTCAAACTGTTGTTATCGGTGGTGTATATGAGTTTTCCGACCG
TAATAGTGTGAGTAAGGTTCCGTTCTTAGGGGATGTGCCTTTCCTTGGTAATTTGTTTAAGAAACGTGGTAAAGATAAAC
AAAAGGCCGAGCTTTTGATTTTCGTCACTCCTAAGGTGTTGCGTGTGGCTAATGCTACTGCTGCAGTGCATTGA

Domains

Predicted by InterProScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(296-374)

Bacterial type II and III secretion system protein (Secretin)

(463-628)

Secretin and TonB N terminus short domain (STN)

(222-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

40.236

93.25

0.375
  pilQ Acinetobacter baumannii D1279779

37.582

96.075

0.361
  pilQ Acinetobacter baumannii strain A118

37.582

96.075

0.361