Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GQX72_RS08930 Genome accession   NZ_CP047059
Coordinates   1958840..1959442 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae isolate CTMA_1441     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1953840..1964442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQX72_RS08900 (GQX72_08900) - 1954078..1954533 (-) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -
  GQX72_RS08905 (GQX72_08905) - 1954658..1955725 (+) 1068 WP_000337335.1 PLP-dependent cysteine synthase family protein -
  GQX72_RS08910 (GQX72_08910) sohB 1955850..1956911 (-) 1062 WP_000394900.1 protease SohB -
  GQX72_RS08915 (GQX72_08915) - 1957070..1957813 (+) 744 WP_001109956.1 YciK family oxidoreductase -
  GQX72_RS08920 (GQX72_08920) - 1957907..1958344 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  GQX72_RS08925 (GQX72_08925) - 1958482..1958730 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  GQX72_RS08930 (GQX72_08930) recR 1958840..1959442 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  GQX72_RS08935 (GQX72_08935) - 1959457..1959786 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  GQX72_RS08940 (GQX72_08940) dnaX 1959857..1961935 (-) 2079 WP_000120801.1 DNA polymerase III subunit gamma/tau -
  GQX72_RS08945 (GQX72_08945) apt 1961954..1962499 (-) 546 WP_000206218.1 adenine phosphoribosyltransferase -
  GQX72_RS08950 (GQX72_08950) - 1962631..1963029 (-) 399 WP_001880857.1 YbaN family protein -
  GQX72_RS08960 (GQX72_08960) - 1963330..1964421 (-) 1092 WP_001911483.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=357229 GQX72_RS08930 WP_001260579.1 1958840..1959442(-) (recR) [Vibrio cholerae isolate CTMA_1441]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=357229 GQX72_RS08930 WP_001260579.1 1958840..1959442(-) (recR) [Vibrio cholerae isolate CTMA_1441]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGCGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGCCAGGAATGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCAGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGCCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAAC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCCCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44

Multiple sequence alignment