Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   E5Y90_RS13040 Genome accession   NZ_CP039143
Coordinates   2754250..2755404 (+) Length   384 a.a.
NCBI ID   WP_174660412.1    Uniprot ID   A0A6N0LI66
Organism   Acinetobacter sp. 10FS3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2749250..2760404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS13025 (E5Y90_13070) - 2750978..2753002 (-) 2025 WP_174660411.1 TonB-dependent copper receptor -
  E5Y90_RS13030 (E5Y90_13075) - 2753073..2753495 (-) 423 WP_151204695.1 DUF2946 family protein -
  E5Y90_RS13035 (E5Y90_13080) def 2753599..2754129 (-) 531 WP_151206858.1 peptide deformylase -
  E5Y90_RS13040 (E5Y90_13085) tsaP 2754250..2755404 (+) 1155 WP_174660412.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  E5Y90_RS13045 (E5Y90_13090) dprA 2755494..2756633 (+) 1140 WP_174660413.1 DNA-processing protein DprA Machinery gene
  E5Y90_RS13050 (E5Y90_13095) - 2756675..2757244 (+) 570 WP_151204699.1 Sua5/YciO/YrdC/YwlC family protein -
  E5Y90_RS13055 (E5Y90_13100) - 2757684..2758583 (-) 900 WP_174660414.1 DMT family transporter -
  E5Y90_RS13060 (E5Y90_13105) - 2758699..2759460 (+) 762 WP_174660415.1 AraC family transcriptional regulator -
  E5Y90_RS13065 (E5Y90_13110) - 2759642..2760235 (+) 594 WP_174660416.1 viral A-type inclusion protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42141.59 Da        Isoelectric Point: 9.7363

>NTDB_id=357229 E5Y90_RS13040 WP_174660412.1 2754250..2755404(+) (tsaP) [Acinetobacter sp. 10FS3-1]
MKKVLKGMPFFRAPGFKKHVLVLAVCMGLGLGTIHTAGAAPTRNVNPPSLKANAPQVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCAGIISRYIGSTALQPQVRVESLNNTIPVIPLEHIKQWLE
RSTIIAPESLTGTPYILGTADQRVLAGKGQKVYSRGKGIVAGQRYGVYREAEPYMLTDAKGNKYNAGQELIQVASAIAVR
NENDISTLELTDTYTAEVRRGDRVLPEYDPMLPTLFYPTNAENVTSGGQIVRVLGSIGTAARHSVVTIDRGTTHGLQAGH
VLSVNQKGEVVTDPKTKERIQLPGERIGNIMVFKAFDQLSYAYVLESELPIKVGAAVQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=357229 E5Y90_RS13040 WP_174660412.1 2754250..2755404(+) (tsaP) [Acinetobacter sp. 10FS3-1]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGGGCCCCGGGGTTTAAAAAACATGTGCTCGTACTCGCAGTTTGTAT
GGGCTTGGGGCTAGGAACAATTCACACCGCTGGGGCAGCGCCTACACGTAACGTCAATCCACCGAGCCTAAAAGCCAATG
CACCACAAGTCTATGTAGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAACGATTCCTCAAAAATCCTGTACGTTGG
CCGGAAATTTGGGCCAGTAATAAGCATGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGCTGATGTGTGATTA
CCAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGCAGGCATTATCAGCCGTTATATCGGTAGCACCGCGC
TGCAACCACAGGTTCGGGTAGAATCTTTAAATAATACCATTCCGGTGATTCCGCTTGAACATATCAAGCAATGGCTGGAA
CGTAGCACGATTATTGCCCCGGAATCTCTGACCGGAACCCCTTATATTTTAGGAACAGCAGACCAGCGTGTACTGGCAGG
CAAAGGCCAGAAAGTATATAGCCGCGGTAAAGGGATTGTGGCCGGTCAGCGTTATGGGGTGTATCGTGAAGCTGAACCTT
ATATGCTTACCGATGCCAAAGGGAATAAATACAATGCCGGCCAGGAGCTGATACAGGTCGCGTCAGCGATTGCGGTACGC
AATGAAAATGACATCAGTACTCTGGAATTGACCGATACCTATACTGCTGAAGTGCGTCGCGGTGACCGTGTCCTGCCAGA
ATATGATCCGATGTTACCGACCCTGTTTTATCCAACCAATGCTGAAAATGTAACCTCTGGTGGCCAGATTGTGCGTGTAC
TGGGTTCAATCGGTACAGCTGCACGACATAGTGTGGTCACGATTGACCGTGGTACCACGCATGGGTTACAGGCCGGCCAT
GTGCTGAGTGTGAACCAGAAAGGTGAAGTCGTGACCGACCCGAAAACCAAGGAGCGTATTCAGTTACCGGGTGAGCGTAT
TGGCAATATCATGGTCTTCAAGGCATTTGATCAGCTGAGCTATGCTTATGTACTTGAAAGTGAGCTGCCAATCAAGGTTG
GGGCAGCGGTTCAGCCTCCATTGCTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0LI66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

67.013

100

0.672

Multiple sequence alignment