Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   E5Y90_RS08330 Genome accession   NZ_CP039143
Coordinates   1751767..1752474 (-) Length   235 a.a.
NCBI ID   WP_151204456.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746767..1757474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS08320 (E5Y90_08375) clpB 1747710..1750289 (-) 2580 WP_174659952.1 ATP-dependent chaperone ClpB -
  E5Y90_RS08325 (E5Y90_08380) - 1750532..1751581 (-) 1050 WP_174659953.1 NADP(H)-dependent aldo-keto reductase -
  E5Y90_RS08330 (E5Y90_08385) crp 1751767..1752474 (-) 708 WP_151204456.1 cAMP-activated global transcriptional regulator CRP Regulator
  E5Y90_RS08335 (E5Y90_08390) - 1752621..1753043 (+) 423 WP_151206108.1 OsmC family protein -
  E5Y90_RS08340 (E5Y90_08395) - 1753091..1754125 (-) 1035 WP_174659954.1 metallophosphoesterase -
  E5Y90_RS08345 (E5Y90_08400) - 1754395..1756632 (-) 2238 WP_174659955.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26416.06 Da        Isoelectric Point: 4.4868

>NTDB_id=357211 E5Y90_RS08330 WP_151204456.1 1751767..1752474(-) (crp) [Acinetobacter sp. 10FS3-1]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNAGDF
FGEMGLFEANPQRTAEVCTRDVCEIAEITYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKNLEEQGMIETDGKAILIFDASLEEPEIVDTDELEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=357211 E5Y90_RS08330 WP_151204456.1 1751767..1752474(-) (crp) [Acinetobacter sp. 10FS3-1]
ATGACTTCAAACTTTTCACAATTAAGCACAGACGCACTTTCTCCGGGGCAATTACCGGAATCTGTGAAGGCGTTATTAAA
ACGTGCATATATTAATCGTTATCCGAAACGTACCACGATCGTGGATGCAGGATCAGAATCTAAATCTTTGTATTTAATTC
TGAAGGGGTCTGTATCTATCATTCTTCGAGAAGATGATGATCGTGAAATTGTCGTTGCATATTTAAATGCGGGTGATTTT
TTTGGGGAAATGGGTTTATTTGAAGCAAATCCACAGCGTACCGCGGAAGTGTGTACTCGTGATGTCTGTGAAATTGCTGA
AATTACCTATGACAACTTTCACGAAATTAGCAAGCAATATCCAGACCTGAGTTATGCCGTATTTGCCCAGCTGGTACGCC
GTCTGAAAAATACCACACGTAAAGTGACTGATCTGGCATTTATTGATGTGTCTGGCCGTATTGCACGCTGTCTGATTGAT
CTGTCATCACAGCCTGAAGCAATGATTTTGCCGAATGGCCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
CGGCTGCTCCCGTGAAATGGTCGGTCGTGTCCTGAAAAACCTGGAAGAGCAGGGCATGATTGAAACTGATGGTAAGGCCA
TTCTGATTTTTGATGCCTCTTTGGAAGAGCCGGAAATCGTGGACACGGACGAGCTTGAAGACGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.064

100

0.911
  crp Vibrio cholerae strain A1552

46.341

87.234

0.404
  crp Haemophilus influenzae Rd KW20

47.692

82.979

0.396

Multiple sequence alignment