Detailed information NTG0035714

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: LL3_RS13590
• Genome accession: NC_017190
• Coordinates: 2682540..2683145 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens LL3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2677540..2688145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL3_RS13555 (LL3_02858)	-	2677551..2678207 (-)	657	WP_013353038.1	DUF421 domain-containing protein	-
LL3_RS13560 (LL3_02859)	-	2678374..2678760 (+)	387	WP_013353039.1	TIGR04086 family membrane protein	-
LL3_RS13565 (LL3_02860)	yajC	2678813..2679073 (-)	261	WP_003152695.1	preprotein translocase subunit YajC	-
LL3_RS13570 (LL3_02861)	tgt	2679105..2680250 (-)	1146	WP_014472142.1	tRNA guanosine(34) transglycosylase Tgt	-
LL3_RS13575 (LL3_02862)	queA	2680278..2681306 (-)	1029	WP_013353041.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
LL3_RS13580 (LL3_02863)	-	2681332..2681532 (-)	201	WP_013353042.1	DUF2905 domain-containing protein	-
LL3_RS13585 (LL3_02864)	ruvB	2681525..2682529 (-)	1005	WP_013353043.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LL3_RS13590 (LL3_02865)	ruvA	2682540..2683145 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
LL3_RS13595 (LL3_02866)	-	2683280..2683756 (-)	477	WP_038463270.1	intercompartmental signaling factor BofC	-
LL3_RS22025	-	2683922..2684041 (-)	120	WP_014470775.1	hypothetical protein	-
LL3_RS13600 (LL3_02868)	-	2684166..2684759 (-)	594	WP_014470776.1	YhcN/YlaJ family sporulation lipoprotein	-
LL3_RS13605 (LL3_02869)	safA	2684908..2686059 (-)	1152	WP_014470777.1	spore coat assembly protein SafA	-
LL3_RS13610 (LL3_02870)	nadA	2686186..2687289 (-)	1104	WP_014470778.1	quinolinate synthase NadA	-
LL3_RS13615 (LL3_02871)	nadC	2687289..2688137 (-)	849	WP_014472144.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=35714 LL3_RS13590 WP_003152683.1 2682540..2683145(-) (ruvA) [Bacillus amyloliquefaciens LL3]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=35714 LL3_RS13590 WP_003152683.1 2682540..2683145(-) (ruvA) [Bacillus amyloliquefaciens LL3]
GTGATTGAATTCGTGAAGGGGACGATTGATTACGTATCGCCCCAATACATCGTGATTGAAAACGGCGGGATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGACG
CCTTTTCTTTGTATGGCTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAATGTCACCGGCATCGGTCCG
AAAGGGGCGCTCGCCATTCTCGGTTCCGGTGATCCGGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCTGGTGTGGGCAAAAAAACGGCACGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGATGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGATGAGGCGCTT
GAAGCGCTCAGGGTACTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGACCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408