Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   E5093_RS05470 Genome accession   NZ_CP039031
Coordinates   1170918..1171622 (-) Length   234 a.a.
NCBI ID   WP_016658382.1    Uniprot ID   -
Organism   Acinetobacter indicus strain yy_1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165918..1176622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5093_RS05445 (E5093_05490) - 1166032..1167351 (+) 1320 WP_005177019.1 adenylosuccinate synthase -
  E5093_RS05450 (E5093_05495) - 1167488..1168273 (+) 786 WP_177155503.1 M48 family metallopeptidase -
  E5093_RS05455 (E5093_05500) - 1168362..1168670 (+) 309 WP_005177024.1 hypothetical protein -
  E5093_RS05460 (E5093_05505) - 1168833..1169615 (+) 783 WP_005177027.1 M48 family metallopeptidase -
  E5093_RS05465 (E5093_05510) - 1169698..1170747 (-) 1050 WP_177155504.1 NADP(H)-dependent aldo-keto reductase -
  E5093_RS05470 (E5093_05515) crp 1170918..1171622 (-) 705 WP_016658382.1 cAMP-activated global transcriptional regulator CRP Regulator
  E5093_RS05475 (E5093_05520) - 1171770..1172192 (+) 423 WP_005177032.1 OsmC family protein -
  E5093_RS05480 (E5093_05525) clpB 1172518..1175097 (+) 2580 WP_177155505.1 ATP-dependent chaperone ClpB -
  E5093_RS05485 (E5093_05530) - 1175325..1176608 (+) 1284 WP_177155506.1 DUF945 family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26329.91 Da        Isoelectric Point: 4.6523

>NTDB_id=356833 E5093_RS05470 WP_016658382.1 1170918..1171622(-) (crp) [Acinetobacter indicus strain yy_1]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVEAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNDAADEQFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=356833 E5093_RS05470 WP_016658382.1 1170918..1171622(-) (crp) [Acinetobacter indicus strain yy_1]
ATGACTTCAAACTTTTCACAATTAAGCACCGATGCCCTGTCTCCTGGTCAATTACCAGATTCAGTCAAGGCATTATTAAA
ACGTGCATATATCAACCGTTATCCGAAACGGACCACAATTGTTGAGGCGGGGTCTGAATCAAAATCACTTTATTTGATTC
TGAAAGGATCTGTTTCCATCATTCTGCGTGAAGATGATGATCGCGAAATTGTTGTGGCTTATTTGAATCCGGGTGACTTC
TTTGGGGAAATGGGTCTATTTGAAGCAAATCCACAACGTACTGCAGAAGTACGCACACGTGACGTTTGTGAAATTGCCGA
AGTGACTTATGAAAACTTCCACGAGCTCAGCAAGCAATATCCAGATTTAAGCTATGCGGTATTTGCCCAACTGGTGCGCC
GTTTAAAAAATACCACGCGTAAAGTGACCGATCTGGCCTTCATTGATGTTTCAGGCCGTATTGCGCGTTGTCTGATTGAC
CTGTCTGCGCAGCCTGAAGCCATGATTTTGCCAAATGGCCGTCAAATCCGCATTACCCGTCAGGAAATTGGCCGCATTGT
TGGCTGTTCACGTGAAATGGTCGGCCGTGTTCTGAAAACCCTGGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCCTCTTTAGAGCAAAATGATGCAGCAGATGAACAGTTTGATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.598

100

0.906
  crp Vibrio cholerae strain A1552

46.829

87.607

0.41
  crp Haemophilus influenzae Rd KW20

47.179

83.333

0.393

Multiple sequence alignment