Detailed information NTG0356730

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GQS52_RS18540
• Genome accession: NZ_CP046907
• Coordinates: 4188513..4189793 (+)
• Length: 426 a.a.
• NCBI ID: WP_182314487.1
• Uniprot ID: A0ABN3KW70
• Organism: Streptomyces sp. SCUT-3
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4183513..4194793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQS52_RS18505 (GQS52_18460)	-	4184073..4184267 (+)	195	WP_182314484.1	hypothetical protein	-
GQS52_RS18510 (GQS52_18465)	-	4184336..4184653 (+)	318	WP_182314485.1	DUF6234 family protein	-
GQS52_RS18525 (GQS52_18480)	tig	4185260..4186672 (+)	1413	WP_182314486.1	trigger factor	-
GQS52_RS18530 (GQS52_18485)	clpP	4186975..4187577 (+)	603	WP_182316551.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GQS52_RS18535 (GQS52_18490)	-	4187675..4188334 (+)	660	WP_182316552.1	ATP-dependent Clp protease proteolytic subunit	-
GQS52_RS18540 (GQS52_18495)	clpX	4188513..4189793 (+)	1281	WP_182314487.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GQS52_RS18545 (GQS52_18500)	-	4189882..4190769 (-)	888	WP_182314488.1	hypothetical protein	-
GQS52_RS18550 (GQS52_18505)	-	4190900..4193527 (+)	2628	WP_182316553.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46583.45 Da
• Isoelectric Point: 4.8781

>NTDB_id=356730 GQS52_RS18540 WP_182314487.1 4188513..4189793(+) (clpX) [Streptomyces sp. SCUT-3]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAESSEVRWEDLPKPREIYEFLEGYVVGQET
AKKALSVAVYNHYKRVQAGENSSHKEDGIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDVE
NILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQID
TTNVLFIVGGAFAGLEKIIESRAGKKGIGFGATIHSKRELDAIDRFGDVMPEDLVKFGMIPEFIGRLPVITSVHNLDREA
LLQILVEPRNALVKQYQRLFELDGVELEFDRGALEAIADQAILRGTGARGLRAIMEEVLMSVMYEVPSRKDVARVVITDD
VVLSNVNPTLVPRETRGLGKGEQKSA

Nucleotide

• Length: 1281 bp

>NTDB_id=356730 GQS52_RS18540 WP_182314487.1 4188513..4189793(+) (clpX) [Streptomyces sp. SCUT-3]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCTTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGGCCCGGCGTGTACATCTGCGACGAGTGCATCGACCTGTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGTCCT
CCGAGGTGCGCTGGGAGGACCTGCCCAAGCCCCGGGAGATCTACGAGTTCCTCGAGGGCTACGTGGTCGGCCAGGAGACC
GCCAAGAAGGCCCTGTCGGTGGCGGTCTACAACCACTACAAGCGGGTGCAGGCCGGCGAGAACAGCAGCCACAAGGAAGA
CGGCATCGAACTCGCCAAGTCCAACATCCTGCTGCTCGGCCCGACCGGCTCCGGCAAGACGCTGCTGGCGCAGACCCTGG
CCCGGATGCTCAACGTGCCCTTCGCGATCGCCGACGCCACGGCCCTGACCGAGGCCGGCTACGTCGGCGAGGACGTCGAG
AACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGACGAGAT
CGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGACGTCTCGGGCGAGGGCGTGCAGCAGGCGCTGCTGA
AGATCCTCGAGGGCACCACGGCCTCGGTGCCGCCGCAGGGCGGGCGCAAGCACCCGCACCAGGAGTTCATCCAGATCGAC
ACCACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCGCGGGCCTGGAGAAGATCATCGAGTCCCGGGCCGGCAAGAAGGG
CATCGGCTTCGGGGCCACCATCCACTCCAAGCGGGAGCTGGACGCGATCGACCGCTTCGGCGACGTCATGCCGGAGGACC
TGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGCCTGCCCGTCATCACCTCCGTGCACAACCTCGACCGCGAGGCG
CTGCTGCAGATCCTCGTCGAGCCGCGCAACGCCCTGGTCAAGCAGTACCAGCGGCTGTTCGAACTGGACGGCGTCGAGCT
GGAGTTCGACCGCGGGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCGGCACCGGCGCCCGCGGCCTGCGCGCGA
TCATGGAGGAGGTGCTGATGTCCGTGATGTACGAGGTCCCCTCCCGCAAGGACGTGGCCCGCGTGGTGATCACCGACGAC
GTGGTGCTCTCCAACGTCAACCCGACCCTGGTCCCGCGCGAGACCCGCGGCCTGGGCAAGGGCGAGCAGAAGAGCGCCTG
A

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (316-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (113-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.25	93.897	0.594
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.237	96.948	0.526