Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GQS52_RS18530 Genome accession   NZ_CP046907
Coordinates   4186975..4187577 (+) Length   200 a.a.
NCBI ID   WP_182316551.1    Uniprot ID   -
Organism   Streptomyces sp. SCUT-3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4181975..4192577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQS52_RS18500 (GQS52_18455) - 4182437..4183627 (-) 1191 WP_182314483.1 acyltransferase family protein -
  GQS52_RS18505 (GQS52_18460) - 4184073..4184267 (+) 195 WP_182314484.1 hypothetical protein -
  GQS52_RS18510 (GQS52_18465) - 4184336..4184653 (+) 318 WP_182314485.1 DUF6234 family protein -
  GQS52_RS18525 (GQS52_18480) tig 4185260..4186672 (+) 1413 WP_182314486.1 trigger factor -
  GQS52_RS18530 (GQS52_18485) clpP 4186975..4187577 (+) 603 WP_182316551.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GQS52_RS18535 (GQS52_18490) - 4187675..4188334 (+) 660 WP_182316552.1 ATP-dependent Clp protease proteolytic subunit -
  GQS52_RS18540 (GQS52_18495) clpX 4188513..4189793 (+) 1281 WP_182314487.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GQS52_RS18545 (GQS52_18500) - 4189882..4190769 (-) 888 WP_182314488.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21244.08 Da        Isoelectric Point: 4.8317

>NTDB_id=356728 GQS52_RS18530 WP_182316551.1 4186975..4187577(+) (clpP) [Streptomyces sp. SCUT-3]
MPSAAGEPTIGGLGDQVYNRLLNERIIFLGQAVDDDIANRITAQLLLLAADPDKDIYLYINSPGGSVTAGMAIYDTMQYI
KNDVVTIAMGLAASMGQFLLTAGAPGKRFALPNAEILMHQPSAGLAGSASDIKIQAEQLLRTKKRMAELTAQHSGRTVEE
INRDADRDRWFSAHEAKEYGLLDEVMHSASGVPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=356728 GQS52_RS18530 WP_182316551.1 4186975..4187577(+) (clpP) [Streptomyces sp. SCUT-3]
ATGCCTTCCGCCGCCGGAGAGCCGACCATCGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCAACGAGCGCATCAT
CTTCCTGGGCCAGGCGGTCGACGACGACATCGCCAACAGGATCACCGCACAGCTCCTGCTCCTGGCCGCCGACCCGGACA
AGGACATCTACCTCTACATCAACTCGCCCGGCGGCTCGGTGACCGCCGGCATGGCGATCTACGACACGATGCAGTACATC
AAGAACGACGTCGTGACCATCGCCATGGGCCTGGCTGCCTCGATGGGCCAGTTCCTGCTGACCGCGGGCGCCCCGGGCAA
GCGGTTCGCGCTGCCGAACGCCGAGATCCTGATGCACCAGCCCTCCGCCGGCCTGGCCGGCTCCGCCTCGGACATCAAGA
TCCAGGCCGAGCAGCTGCTGCGCACGAAGAAGCGGATGGCCGAGCTGACCGCCCAGCACTCCGGCCGCACGGTCGAGGAG
ATCAACCGCGACGCCGACCGGGACCGCTGGTTCTCCGCACACGAGGCCAAGGAGTACGGCCTGCTCGACGAGGTCATGCA
CTCCGCCTCCGGTGTCCCGGGCGGTGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.941

93.5

0.495
  clpP Lactococcus lactis subsp. cremoris KW2

51.295

96.5

0.495
  clpP Streptococcus mutans UA159

51.309

95.5

0.49
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

95

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.777

96.5

0.49
  clpP Streptococcus pneumoniae D39

48.705

96.5

0.47
  clpP Streptococcus pneumoniae TIGR4

48.705

96.5

0.47
  clpP Streptococcus pneumoniae Rx1

48.705

96.5

0.47
  clpP Streptococcus pneumoniae R6

48.705

96.5

0.47
  clpP Streptococcus pyogenes MGAS315

48.691

95.5

0.465
  clpP Streptococcus pyogenes JRS4

48.691

95.5

0.465
  clpP Streptococcus thermophilus LMG 18311

48.677

94.5

0.46
  clpP Streptococcus thermophilus LMD-9

48.677

94.5

0.46

Multiple sequence alignment