Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VEA_RS12180 Genome accession   NC_013456
Coordinates   2633186..2635444 (-) Length   752 a.a.
NCBI ID   WP_006742149.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2628186..2640444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS12160 (VEA_003984) kdsB 2629478..2630233 (-) 756 WP_005390653.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VEA_RS12165 (VEA_003985) - 2630233..2630412 (-) 180 WP_005390649.1 Trm112 family protein -
  VEA_RS12170 (VEA_003986) lpxK 2630393..2631400 (-) 1008 WP_006742147.1 tetraacyldisaccharide 4'-kinase -
  VEA_RS12175 (VEA_003987) msbA 2631406..2633154 (-) 1749 WP_006742148.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VEA_RS12180 (VEA_003988) comEC 2633186..2635444 (-) 2259 WP_006742149.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VEA_RS12185 (VEA_003989) - 2635453..2635962 (+) 510 WP_006742150.1 DUF2062 domain-containing protein -
  VEA_RS12190 (VEA_003990) lolE 2636111..2637355 (-) 1245 WP_012841999.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VEA_RS12195 (VEA_003991) lolD 2637358..2638065 (-) 708 WP_006742152.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VEA_RS12200 (VEA_003992) lolC 2638058..2639266 (-) 1209 WP_006742153.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  VEA_RS12205 (VEA_003993) - 2639516..2640085 (+) 570 WP_006742154.1 hypothetical protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84408.28 Da        Isoelectric Point: 8.1795

>NTDB_id=35653 VEA_RS12180 WP_006742149.1 2633186..2635444(-) (comEC) [Vibrio antiquarius]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVALKKVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSVSLKPITGLRNEAGFDAEKHAM
GKSIIARGVVNKDVTWIIRSTTSLRQAIIADVSEDVSSLHHFSLINALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGVVVGGAIRYALPQYQLLPSLCGLMFAVAYAWLADFSLPTTRAVSVCVIYVVLKYTLVHWASWRVLLLAVALQL
LVQPFASYSMSFWLSYLSVCAVLFAINLVRHQNGGWKAKLKVLLLTQLMLSALIVPISGYYFSGFSLSSIAYNLAFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWQLVDWSLQPLSTSIQYAIGSWQAISIEMTGLILAGIICLVFQRFMFQYAWCLLL
GIVISIKLTSEYDQQHWRIDVLDVGHGLAVIVEKDDKVLLYDTGKAWQNGSIAEQVVTPVLHQRGYESIDTMILSHSDND
HAGGRLFIEDSFSPQRKLSSQNFIGYESCTRGDHWKWQGLNIEVLWPPALVQRAYNPHSCVLRLTDPISTFSMLFTGDIE
TISEWILLREPEKLKSDVMLVPHHGSKSSSNPRFIEAVNPSVAVASLAKNNQWGMPAEHVVTAYRKLDITWLDTGEYGQV
SFSIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=35653 VEA_RS12180 WP_006742149.1 2633186..2635444(-) (comEC) [Vibrio antiquarius]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATTTCGTCAGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGCTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGCATTGTGGCTCTAAAAAA
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCGTCTCGTTAAAGCCGATTACAGGCCTACGCAACGAAGCTGGTTTTGACGCTGAAAAGCACGCAATG
GGTAAAAGTATTATCGCACGCGGTGTTGTTAACAAGGATGTTACCTGGATTATTCGTTCTACTACATCTTTGCGCCAAGC
CATTATCGCTGATGTTTCGGAGGATGTGTCCTCCCTTCATCATTTCTCGTTAATAAATGCGTTAGTTTTTGCCGATCGCT
CTTGGTTATCTAAGGAGGATTGGCAAGCACTCAGAGACAGTGGTTTACTGCACTTGGTCTCGATTTCGGGCTTACATATT
GGTATGGCGTTTACTTTTGGGGTAGTGGTGGGCGGTGCCATTCGTTATGCGTTACCTCAATACCAGCTATTGCCTAGCTT
ATGTGGGCTGATGTTTGCCGTTGCCTATGCTTGGTTAGCGGACTTCTCATTACCTACTACCCGCGCGGTGTCTGTATGTG
TTATTTACGTCGTTCTCAAATATACCTTAGTGCACTGGGCTTCCTGGCGGGTACTTTTGCTCGCGGTAGCGCTACAACTG
CTTGTTCAACCTTTTGCATCGTATAGCATGAGTTTTTGGTTATCGTATTTGTCAGTTTGCGCAGTGCTGTTTGCAATCAA
TTTGGTTCGGCATCAAAACGGGGGCTGGAAGGCGAAGTTAAAAGTGTTATTGCTTACTCAATTGATGTTGAGTGCGTTAA
TCGTGCCTATTAGTGGCTATTACTTTTCTGGTTTCAGTTTGTCATCAATTGCATACAACTTGGCGTTTATTCCTTGGTTC
GGATTTATCGTTGTGCCTTTGATGTTTCTGGCCCTGTTCTCATCTTTATTTCTTGAAATGATAGCAAAGCCTCTGTGGCA
GTTGGTGGACTGGTCATTGCAGCCATTGAGCACGTCAATTCAGTACGCGATAGGCTCCTGGCAAGCCATTAGTATAGAAA
TGACAGGGTTGATTCTGGCGGGAATTATTTGCTTGGTGTTTCAACGATTCATGTTTCAGTACGCGTGGTGTTTGTTACTT
GGCATTGTAATTAGTATTAAGCTCACATCGGAATATGATCAGCAACATTGGCGCATTGATGTACTAGATGTGGGCCATGG
CCTTGCGGTGATTGTAGAAAAAGACGATAAAGTGTTGCTCTATGATACAGGTAAAGCATGGCAAAATGGCAGTATTGCGG
AGCAGGTCGTCACTCCGGTCTTGCATCAACGAGGTTATGAAAGCATCGATACGATGATCCTCAGCCACTCCGACAATGAC
CATGCAGGAGGACGCTTGTTCATTGAAGATTCCTTTTCGCCACAGCGCAAACTCAGTAGCCAAAACTTTATCGGATATGA
GTCTTGTACTCGCGGCGATCATTGGAAATGGCAAGGGTTAAATATAGAAGTACTTTGGCCTCCTGCTCTTGTTCAACGTG
CATATAATCCGCACTCTTGTGTACTACGCCTTACCGACCCTATTTCTACGTTCAGTATGCTTTTTACTGGTGATATTGAG
ACCATTAGCGAGTGGATCTTGCTCAGGGAGCCTGAAAAGTTAAAAAGTGATGTGATGTTGGTCCCTCATCATGGTAGTAA
AAGTTCGTCGAATCCTCGCTTTATTGAAGCGGTAAACCCGAGTGTGGCCGTTGCTTCTTTGGCAAAAAATAATCAATGGG
GAATGCCGGCAGAACATGTTGTTACAGCATATCGCAAGCTTGACATTACTTGGCTTGATACTGGGGAATATGGTCAGGTA
AGCTTCTCTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-686)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

70.612

100

0.706
  comEC Vibrio campbellii strain DS40M4

66.09

100

0.661
  comEC Vibrio cholerae strain A1552

41.987

100

0.422

Multiple sequence alignment