Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GPY01_RS14465 Genome accession   NZ_CP046839
Coordinates   2158983..2161061 (-) Length   692 a.a.
NCBI ID   WP_032470250.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2153983..2166061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS14450 ompR 2155106..2155828 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  GPY01_RS14455 envZ 2155897..2157213 (+) 1317 WP_001222692.1 two-component system sensor histidine kinase EnvZ -
  GPY01_RS14460 - 2157238..2158638 (-) 1401 WP_054104003.1 uracil-xanthine permease family protein -
  GPY01_RS14465 recG 2158983..2161061 (-) 2079 WP_032470250.1 ATP-dependent DNA helicase RecG Machinery gene
  GPY01_RS14470 spoT 2161179..2163296 (-) 2118 WP_000280448.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GPY01_RS14475 rpoZ 2163328..2163600 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  GPY01_RS14480 gmk 2163708..2164331 (-) 624 WP_000515793.1 guanylate kinase -
  GPY01_RS14485 - 2164699..2165370 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76896.09 Da        Isoelectric Point: 7.3972

>NTDB_id=356351 GPY01_RS14465 WP_032470250.1 2158983..2161061(-) (recG) [Vibrio cholerae strain 2011EL-1271]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALALLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGECDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=356351 GPY01_RS14465 WP_032470250.1 2158983..2161061(-) (recG) [Vibrio cholerae strain 2011EL-1271]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTAAAAATCAGTGATGGCAACGGTACACTGACACTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAGTTTGTGCATGCCTATGGGGAAATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAGCCAAACCTCACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTACGTAATCTCACCGACCAAGCGTTGGCGCTACTGGAAAAATCCGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTGGCCCAAGCGCTGAAAATCATTCATCGCCCATCGGCGGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAGCTGCTGGCACAGAATCTCTCCATGCTGGCGATTCGCAGT
CAAGGCCAGCAAGATGTGGCCTTGCCACTGGCCCCCGTCCACCAACTCAAACAACAACTCTTGGCACAGCTGCCTTTTAC
GCCGACTAAGGCGCAGCAGCGTGTGGTTGCCGAAATCGAAGCGGATTTAGAAAAACCGCATCCTATGATGCGCTTAGTGC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTGGCC
TTGATGGCTCCTACCGAGCTGTTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
GGGGTGGCTCGCGGGGAAACTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAGCAAGTGTCGTTTGACCATCTTGCCTTGGTGATTATTGATGAGCAGCATCGC
TTCGGGGTGCATCAGCGCTTAGAGCTACGCGAGAAAGGCGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGTAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGACGGATGAAACCGGCTGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTCGCCACCACAGTGATTGAAGTGGGCGTGGATGTGCCTAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGGCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTAGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTACTGGGTACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGTATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGTGAGTGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

RecG wedge domain (RecG_wedge)

(15-171)

DEAD/DEAH box helicase (DEAD)

(271-432)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.595

97.11

0.491
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37