Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GPY41_RS22320 Genome accession   NZ_CP046835
Coordinates   3048799..3050880 (-) Length   693 a.a.
NCBI ID   WP_039450061.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3043799..3055880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS22300 greB 3044267..3044749 (+) 483 WP_013572566.1 transcription elongation factor GreB -
  GPY41_RS22305 ompR 3044950..3045669 (+) 720 WP_011078925.1 two-component system response regulator OmpR -
  GPY41_RS22310 envZ 3045762..3047060 (+) 1299 WP_158124022.1 two-component system sensor histidine kinase EnvZ -
  GPY41_RS22315 - 3047137..3048543 (-) 1407 WP_158124023.1 uracil-xanthine permease family protein -
  GPY41_RS22320 recG 3048799..3050880 (-) 2082 WP_039450061.1 ATP-dependent DNA helicase RecG Machinery gene
  GPY41_RS22325 trmH 3051015..3051701 (-) 687 WP_053542243.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  GPY41_RS22330 spoT 3051789..3053909 (-) 2121 WP_011078920.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GPY41_RS22335 rpoZ 3053944..3054216 (-) 273 WP_011078919.1 DNA-directed RNA polymerase subunit omega -
  GPY41_RS22340 gmk 3054344..3054967 (-) 624 WP_011078918.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76808.92 Da        Isoelectric Point: 7.5816

>NTDB_id=356283 GPY41_RS22320 WP_039450061.1 3048799..3050880(-) (recG) [Vibrio vulnificus strain 07-2444]
MSAQLLSAVPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEMNLELFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=356283 GPY41_RS22320 WP_039450061.1 3048799..3050880(-) (recG) [Vibrio vulnificus strain 07-2444]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACGTCCCTCAGCGGGGTCGGTGCTAAGGTGGCTGAAAAGCTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGATCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGTACCCGCATCTACCCGATTG
CCAAATTGCATGCTGGATTGTGGGCCGCTGTGCAGGGTAATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTAACGGTAAAACTCAGCGACGGGAATGGCACCATCACGCTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGCAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCTCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTACCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATGAATCTGGAACTGTTCG
ATGAAGGAAAGCACCCAGCCCAAATCCGCTTAATTATGGAAGAGTTGTTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGTTGCCACTGCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCCCAGCTGCCTTT
TTCACCGACCAATGCCCAAGCGCGAGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGCTCGGGTAAAACCTTAGTGGCAGCCTTGGCCGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTTCTGGCCGAGCAGCACGCGATCAACTTCGCCAATTGGTTTGAAAAAATGGGCATTCC
CGTTGGCTGGCTCGCTGGCAAGCTCAAAGGTAAAGCCAAAGAAGCCGAATTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTCGGGACACATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCGCTTGTGATCATTGATGAACAGCAC
CGCTTTGGCGTGCATCAACGCTTGGAACTGCGCGAAAAAGGCGCCAAACAAGGCGCTTACCCACATCAACTGATCATGAC
TGCTACTCCGATCCCTCGCACATTGGCCATGACCGCTTATGCCGATTTGGAAACATCGGTGATCGACGAGTTACCGCCGG
GACGAACCCCTATCCAAACCGTCGCGATTCCCGACACCAAACGCGAGGACATTGTCGAGCGCATTCGTCATGCCTGCCTC
AATGAGGGTAAGCAGGCGTATTGGGTCTGTACCCTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGAAAC
TGCCGAAGAGCTGCAACGTAAATTGCCTGATGTGCGCATTGGTTTGGTGCACGGCCGAATGAAACCAGCTGAAAAACAAG
CGGTGATGCAAGCGTTCAAAAACAATGAATTGCATCTTTTGGTGGCCACCACAGTGATCGAAGTCGGTGTCGATGTGCCT
AACGCCAGCTTGATGATCATCGAAAACCCCGAGCGCTTGGGTCTCGCACAATTGCACCAGTTGCGCGGTCGCGTGGGTCG
AGGCTCAGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACGGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCTCAGCGCGATCTTGAGATCCGTGGGCCAGGTGAGCTGCTCGGCACCAAACAA
ACTGGCCTGGCGGATTTCAAAATTGCCGATCTCGTCCGCGACCAGCGCCTTATCCCCGAAGTTCAACGCGCCGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-172)

DEAD/DEAH box helicase (DEAD)

(271-433)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG/mmsA Streptococcus pneumoniae R6

40.089

96.825

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.089

96.825

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.565

96.537

0.372

Multiple sequence alignment