Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VEA_RS03520 Genome accession   NC_013456
Coordinates   734523..735155 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio antiquarius     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 729523..740155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS03505 (VEA_002276) astA 730831..731850 (+) 1020 WP_006742982.1 arginine N-succinyltransferase -
  VEA_RS03510 (VEA_002277) astD 731879..733336 (+) 1458 WP_005397684.1 succinylglutamate-semialdehyde dehydrogenase -
  VEA_RS03515 (VEA_002278) - 733586..734377 (+) 792 WP_005397681.1 DUF1338 domain-containing protein -
  VEA_RS03520 (VEA_002279) crp 734523..735155 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  VEA_RS03525 (VEA_002280) - 735396..736265 (-) 870 WP_005397679.1 phosphoribulokinase -
  VEA_RS03530 (VEA_002281) - 736390..736602 (-) 213 WP_005397677.1 YheU family protein -
  VEA_RS03535 (VEA_002282) - 736636..737643 (-) 1008 WP_006742981.1 hydrolase -
  VEA_RS03540 (VEA_002283) - 737731..738219 (-) 489 WP_005397673.1 TIGR02444 family protein -
  VEA_RS03545 (VEA_002284) - 738216..740135 (-) 1920 WP_031780646.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=35625 VEA_RS03520 WP_005381432.1 734523..735155(-) (crp) [Vibrio antiquarius]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=35625 VEA_RS03520 WP_005381432.1 734523..735155(-) (crp) [Vibrio antiquarius]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGCGAAAAGGCAGAAACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAATTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGCCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAAATGCTAGAAGAGCAGAACCTAATCTCTGCGCACGGTAAAACTATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment