Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY41_RS16340 Genome accession   NZ_CP046835
Coordinates   1772217..1774370 (-) Length   717 a.a.
NCBI ID   WP_233263820.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 07-2444     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767217..1779370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS24775 - 1767554..1768045 (-) 492 WP_233263818.1 GGDEF domain-containing protein -
  GPY41_RS24780 - 1767973..1768341 (-) 369 WP_233263819.1 hypothetical protein -
  GPY41_RS16320 kdsB 1768511..1769266 (-) 756 WP_017790162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPY41_RS16325 - 1769266..1769445 (-) 180 WP_011079973.1 Trm112 family protein -
  GPY41_RS16330 lpxK 1769426..1770433 (-) 1008 WP_158123659.1 tetraacyldisaccharide 4'-kinase -
  GPY41_RS16335 msbA 1770433..1772184 (-) 1752 WP_158123660.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY41_RS16340 comEC 1772217..1774370 (-) 2154 WP_233263820.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY41_RS16345 - 1774475..1774984 (+) 510 WP_011079969.1 DUF2062 domain-containing protein -
  GPY41_RS16350 lolE 1775180..1776424 (-) 1245 WP_158123662.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY41_RS16355 lolD 1776435..1777118 (-) 684 WP_158123663.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY41_RS16360 lolC 1777111..1778316 (-) 1206 WP_158123664.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY41_RS16365 - 1778583..1779152 (+) 570 WP_072609078.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80590.98 Da        Isoelectric Point: 8.5497

>NTDB_id=356237 GPY41_RS16340 WP_233263820.1 1772217..1774370(-) (comEC) [Vibrio vulnificus strain 07-2444]
MLIVVAIFIIIVRKTCRYLLGVTTALLIAISAGNLMQWQVKTLFQAGENITINGAVDSPFKQISHGYEGVVSITAINNSH
LVWTRRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRLLSVSGGRQALIEKA
QQILVRSDHTGYLLGLSFGIRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSL
SWSYAWLAGFTLPTQRAIVFVTLVALFSFTSRQVGRWTVLLLALAFCLAMSPFSALSTSLWLSFLAVSCVFLVVDLHESS
STWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLSAWLYNFLFIPWFSLVVVPVIFVALVLTALDMMPVASMLWQLADFS
LWPLTFAMPYAHLGWWGLSSFQVLLVALCALAVMLRHVIRWQFSAVLIILLSVTSLLNQPLSHTRIDILDVGHGLAVLIE
KGGKTLLYDTGKSWHGGSIAQQVVEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQNMRPQWVRSSHYLSDFPCIKGQD
FEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDALAEWILIREPEQLNSDVVLVPHHGSQTSSIEPF
VKALQADAAIASLAKGNQWGMPQPQVVETYRRHRTQWFDTGELGQITLYVEQRRWQIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=356237 GPY41_RS16340 WP_233263820.1 1772217..1774370(-) (comEC) [Vibrio vulnificus strain 07-2444]
ATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGTTGGGGGTGACCACCGCACTTTT
GATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAGAATATTACCATAAATG
GCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGCAATAAATAATAGTCAT
TTAGTGTGGACCCGGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGTCAGGGGGATCAAATCGTAGCGCACGT
TACGCTAAAACGTGTCTATGGATTACTCAATGAAGCAGGGTTTGATGCTGAACGTTTTGCTGTCAGTCAAGGCATCGTTG
GACGTGCAACTATTGATGATTCTCGCTCTTGGCGTTTGCTCTCGGTGAGCGGAGGGCGACAAGCACTGATCGAAAAAGCG
CAGCAGATACTGGTTCGTAGCGATCATACCGGTTATTTGCTTGGCTTAAGCTTTGGTATTCGCGACGACATTACCGACGA
ACAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTGCTTTCCATCTCAGGGTTGCACATTGGTATGGCTTTTGGCA
TCGGTTACTGGCTAGGGCATTGGTTGCGTTTTGGACGGCTTACTCTCGTTTGGCTGCCGTTGGCTATTGGATTAAGTCTC
AGTTGGAGCTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCGATCGTCTTTGTTACGTTAGTGGCGTTGTT
CTCGTTTACGTCGAGGCAAGTGGGGCGCTGGACAGTCTTGCTGTTGGCACTGGCCTTTTGCCTAGCGATGTCGCCATTTT
CTGCTCTTTCTACCAGTCTCTGGCTCTCTTTTCTTGCTGTCAGCTGCGTCTTTCTGGTGGTTGATCTCCATGAATCGTCT
TCCACTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTACTGCTCTATCTCGCACCTGTGACTGCTTA
CTTCTTTTCCGGTCTGAGTTTATCCGCCTGGCTGTACAACTTTCTGTTTATCCCTTGGTTTAGCTTGGTGGTGGTGCCTG
TCATATTTGTTGCACTCGTGCTGACGGCACTGGATATGATGCCTGTGGCCAGTATGCTATGGCAGTTGGCGGATTTTAGT
TTATGGCCATTAACTTTCGCGATGCCTTACGCCCATTTAGGTTGGTGGGGGCTGTCTTCTTTTCAGGTGTTGTTGGTCGC
GTTGTGCGCGCTCGCTGTGATGCTTCGACATGTTATTCGCTGGCAATTCTCTGCCGTTCTGATCATTTTGCTCAGCGTTA
CTTCACTCTTGAACCAGCCTCTTTCTCACACCCGAATTGACATTTTGGATGTTGGCCATGGGCTCGCCGTATTGATTGAG
AAAGGCGGTAAAACACTGCTTTATGACACCGGAAAGTCTTGGCATGGCGGCAGTATTGCGCAGCAAGTGGTCGAGCCTAT
TTTATTGAGTCGGGGTAGTAGAAGCCTGGATGGGGTTATCATCAGTCATCAAGATGACGATCATGCAGGTGGCTTGCCCT
ATTTGCAGCAAAACATGCGCCCACAGTGGGTAAGGAGTAGTCATTACTTGAGTGACTTTCCTTGTATTAAAGGTCAGGAC
TTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACAATCCACACTCCTGTGT
GATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTGGCTGAGTGGATCCTGA
TTCGTGAACCTGAACAGTTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTCGTCGATTGAGCCTTTT
GTGAAAGCCCTCCAAGCAGACGCGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGCCACAACCGCAAGTGGT
CGAGACTTATCGACGACATCGTACGCAGTGGTTTGATACCGGCGAGCTGGGCCAGATAACTTTGTATGTGGAACAGAGAC
GCTGGCAAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(471-652)

Competence protein (Competence)

(176-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

45.816

98.326

0.45
  comEC Vibrio campbellii strain DS40M4

44.613

100

0.45
  comEC Vibrio cholerae strain A1552

41.864

100

0.42