Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GPY16_RS14465 Genome accession   NZ_CP046832
Coordinates   3103309..3105390 (+) Length   693 a.a.
NCBI ID   WP_017420487.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3098309..3110390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS14445 gmk 3099213..3099836 (+) 624 WP_011078918.1 guanylate kinase -
  GPY16_RS14450 rpoZ 3099964..3100236 (+) 273 WP_017420484.1 DNA-directed RNA polymerase subunit omega -
  GPY16_RS14455 spoT 3100271..3102391 (+) 2121 WP_038964522.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GPY16_RS14460 trmH 3102479..3103165 (+) 687 WP_038969587.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  GPY16_RS14465 recG 3103309..3105390 (+) 2082 WP_017420487.1 ATP-dependent DNA helicase RecG Machinery gene
  GPY16_RS14470 - 3105646..3107052 (+) 1407 WP_102887334.1 uracil-xanthine permease family protein -
  GPY16_RS14475 envZ 3107130..3108428 (-) 1299 WP_045629282.1 two-component system sensor histidine kinase EnvZ -
  GPY16_RS14480 ompR 3108522..3109241 (-) 720 WP_158105531.1 two-component system response regulator OmpR -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76838.95 Da        Isoelectric Point: 7.5816

>NTDB_id=356196 GPY16_RS14465 WP_017420487.1 3103309..3105390(+) (recG) [Vibrio vulnificus strain 06-2410]
MSAQLLSAVPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGNVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEMNLELFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKTKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=356196 GPY16_RS14465 WP_017420487.1 3103309..3105390(+) (recG) [Vibrio vulnificus strain 06-2410]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACGTCCCTCAGCGGGGTCGGTGCTAAGGTGGCTGAAAAGCTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGATCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGTACCCGCATCTACCCGATTG
CCAAATTGCATGCTGGATTGTGGGCCGCTGTGCAGGGTAATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTAACGGTAAAACTCAGCGACGGGAATGGCACCATCACGCTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGCAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCAGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATGAATCTGGAACTGTTCG
ATGAAGGAAAGCACCCAGCCCAAATCCGCTTAATTATGGAAGAGTTGTTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGTTGCCACTGCCCCCTGTCCACCAGCTTAAACAACAGCTGTTAGCCCAGCTGCCTTT
TTCACCGACCAATGCACAAGCGCGGGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGTTCGGGCAAAACCTTAGTGGCGGCATTGGCGGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTGCTGGCCGAGCAGCACGCGATCAACTTCGCTAATTGGTTTGAAAAAATGGGCATCCC
CGTTGGCTGGCTAGCAGGCAAGCTCAAAGGCAAGACCAAAGAAGCCGAGTTAGCCCGCATTGCCAGTGGCGAAGCGAAAA
TGGTGGTTGGGACGCATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCGCTTGTGATCATTGATGAACAACAT
CGCTTTGGTGTACATCAACGCTTGGAGCTGCGTGAAAAAGGCGCCAAACAAGGTGCTTACCCACACCAACTGATCATGAC
CGCCACTCCGATCCCTCGCACATTGGCCATGACCGCCTATGCCGATTTGGAAACGTCGGTGATCGACGAGTTACCGCCGG
GGCGAACCCCGATCCAAACCGTCGCGATTCCCGATACCAAACGCGAGGACATTGTCGAGCGCATTCGTCATGCCTGCCTC
AATGAGGGCAAGCAGGCGTATTGGGTCTGTACCTTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGAAAC
CGCCGAAGAGCTGCAACGTAAATTGCCTGATGTGCGCATTGGTTTGGTGCATGGCCGAATGAAACCGGCTGAAAAACAAG
CGGTAATGCAAGCGTTCAAAAACAATGAATTACATCTTTTGGTCGCCACCACAGTGATCGAAGTCGGTGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCTGAGCGCTTGGGTCTCGCACAATTGCATCAGTTGCGCGGTCGCGTCGGTCG
AGGCTCAGTTGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACAGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCCCAGCGCGATCTTGAAATCCGCGGGCCGGGCGAACTACTTGGCACCAAACAG
ACTGGCTTGGCGGATTTCAAAATTGCCGATCTCGTCCGAGATCAGCGCCTAATCCCCGAAGTTCAACGCGCCGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAACGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

DEAD/DEAH box helicase (DEAD)

(271-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.107

96.97

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.089

96.825

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.089

96.825

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.565

96.537

0.372

Multiple sequence alignment