Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY16_RS05285 Genome accession   NZ_CP046832
Coordinates   1121990..1124164 (+) Length   724 a.a.
NCBI ID   WP_263129984.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1116990..1129164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS05260 - 1117229..1117798 (-) 570 WP_038939818.1 hypothetical protein -
  GPY16_RS05265 lolC 1118064..1119269 (+) 1206 WP_158105058.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY16_RS05270 lolD 1119262..1119945 (+) 684 WP_038969895.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY16_RS05275 lolE 1119956..1121200 (+) 1245 WP_158105059.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY16_RS05280 - 1121397..1121906 (-) 510 WP_026050611.1 DUF2062 domain-containing protein -
  GPY16_RS05285 comEC 1121990..1124164 (+) 2175 WP_263129984.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY16_RS05290 msbA 1124197..1125948 (+) 1752 WP_045608517.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY16_RS05295 lpxK 1125948..1126955 (+) 1008 WP_103163767.1 tetraacyldisaccharide 4'-kinase -
  GPY16_RS05300 - 1126936..1127115 (+) 180 WP_011079973.1 Trm112 family protein -
  GPY16_RS05305 kdsB 1127115..1127870 (+) 756 WP_017790162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPY16_RS05310 - 1128041..1128829 (+) 789 WP_158105061.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 81434.11 Da        Isoelectric Point: 8.1907

>NTDB_id=356158 GPY16_RS05285 WP_263129984.1 1121990..1124164(+) (comEC) [Vibrio vulnificus strain 06-2410]
MPSWPWLMLIVVAIFIIIVRKTCRYLLGMTIALLIAISAGNLMQWQVKTLFQAGENITINGAVDSPFKQISHGYEGVVSI
TAINNSHLMWPLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRFLSVSGGR
QALIEKAQQLLVNSNHTGYLLGLSFGIRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLP
LAIGLSLSWSYAWLAGFTLPTQRAIVFVTLVALFSLTSRQVGRWTVLLLALAFCLAMSPFSALSASLWLSFLAVSCVFLV
VDLHESSSTWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFSLVVVPVIFVALVLTALDMMPVASML
WQLADFSLWPLTFAMPYAHLGWWGLSSFQVLLVALCALAVMLRHVIRWQFSAVLIILLSIASLLNQPLSRTRIDVLDVGH
GLAVLIEKDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQNMRPQWVRSSHYLSDF
PCIKGQDFEWQGLKMTVLWPPKQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDALAEWILIREPEQLNSDVVLVPHHGSQ
TSSIEPFVNAVQADAAIASLAKGNQWGMPQPQVVETYRRHRTQWFDTGELGQITLYVEQRRWQIVSRRDTFNAWYRQMLR
NQVE

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=356158 GPY16_RS05285 WP_263129984.1 1121990..1124164(+) (comEC) [Vibrio vulnificus strain 06-2410]
ATGCCTTCCTGGCCTTGGTTAATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCT
GGGGATGACCATCGCACTTTTGATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAG
GGGAGAATATTACCATAAATGGCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATC
ACAGCAATAAATAATAGTCATTTAATGTGGCCCCTGCGACCCAAAGTGCGTTTGATCTCACCCATTCCTCTTGGTCAGGG
GGATCAAATCGTAGCGCACGTTACGCTAAAACGTGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCTGAACGTTTTG
CTGTCAGTCAAGGCATCGTCGGACGTGCAACTATTGATGACTCACGCTCTTGGCGTTTCCTCTCGGTGAGCGGAGGGCGA
CAAGCACTGATCGAAAAAGCGCAGCAGCTCCTGGTTAATAGCAATCATACCGGTTATTTGCTTGGCTTAAGCTTTGGTAT
TCGCGACGACATTACCGACGAACAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTGCTTTCCATCTCAGGGTTGC
ACATTGGTATGGCTTTTGGCATCGGTTACTGGCTAGGGCATTGGTTGCGTTTTGGACGGCTTACTCTCGTTTGGCTGCCG
TTGGCTATTGGATTAAGTCTCAGTTGGAGCTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCGATCGTCTT
TGTTACGTTAGTGGCGTTGTTCTCGTTGACGTCGAGGCAAGTGGGGCGCTGGACAGTCTTGCTGTTGGCACTGGCCTTTT
GCCTAGCGATGTCGCCATTTTCTGCTCTTTCTGCCAGTCTCTGGCTCTCTTTTCTTGCTGTCAGTTGCGTCTTTCTGGTG
GTTGATCTCCATGAATCGTCTTCCACTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTACTGCTCTA
TCTCGCACCTGTGACAGCTTATTTCTTTTCCGGTCTGAGTTTAGCCGCCTGGCTGTACAACTTTCTGTTTATCCCTTGGT
TTAGCTTGGTGGTGGTGCCTGTCATATTTGTTGCACTCGTGCTGACGGCACTGGATATGATGCCTGTGGCCAGCATGCTA
TGGCAGTTGGCGGATTTTAGTTTATGGCCATTAACTTTCGCGATGCCTTACGCCCATTTAGGCTGGTGGGGGCTGTCTTC
TTTTCAGGTGTTGTTGGTCGCGTTGTGCGCGCTCGCTGTGATGCTTCGACATGTTATTCGCTGGCAATTCTCTGCCGTTC
TGATCATTTTGCTCAGCATTGCTTCACTCTTGAACCAGCCTCTTTCTCGCACTCGAATTGACGTTTTGGATGTTGGCCAT
GGGCTCGCCGTATTGATTGAGAAAGACGGTAAAACACTGCTTTATGACACCGGAAAGTCTTGGCATGGTGGTAGTATTGC
GCAGCAAGTGATCGAGCCTATTTTATTGAGTCGGGGTAGTAGAAGCCTGGATGGGGTGATCATCAGTCATCAAGATGACG
ATCATGCAGGTGGCTTGCCCTATTTGCAGCAAAACATGCGCCCACAGTGGGTAAGGAGTAGTCATTACTTGAGTGACTTT
CCTTGTATTAAAGGTCAGGACTTTGAGTGGCAAGGGCTTAAAATGACTGTGCTTTGGCCACCAAAGCAAGTGACTCGTGC
CTACAACCCACACTCCTGTGTGATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGCGATATTGACG
CTTTGGCTGAGTGGATCCTGATTCGTGAACCTGAACAGTTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAA
ACTTCGTCGATTGAGCCTTTTGTGAACGCGGTCCAAGCAGACGCGGCAATCGCTTCGTTGGCAAAAGGAAATCAGTGGGG
GATGCCACAACCACAAGTGGTCGAGACTTATCGACGACATCGTACGCAGTGGTTTGATACCGGTGAGCTGGGCCAGATAA
CTTTGTATGTGGAACAGAGACGCTGGCAAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGT
AACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(4-148)

Metallo-beta-lactamase superfamily (Lactamase_B)

(478-659)

Competence protein (Competence)

(183-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

45.554

100

0.46
  comEC Vibrio campbellii strain DS40M4

45.068

100

0.454
  comEC Vibrio cholerae strain A1552

42.779

100

0.43