Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GPY55_RS19220 Genome accession   NZ_CP046831
Coordinates   1905715..1906359 (-) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain 2012AW-0224     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900715..1911359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY55_RS19210 pgsA 1903277..1903834 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPY55_RS19215 uvrC 1903881..1905713 (-) 1833 WP_005494715.1 excinuclease ABC subunit UvrC Machinery gene
  GPY55_RS19220 letA 1905715..1906359 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GPY55_RS19225 - 1906859..1909222 (+) 2364 WP_083135437.1 DNA polymerase II -
  GPY55_RS19230 - 1909219..1909986 (-) 768 WP_017448417.1 nucleotidyltransferase domain-containing protein -
  GPY55_RS19235 yeiP 1910173..1910739 (+) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  GPY55_RS19240 - 1910742..1911062 (+) 321 WP_029817335.1 HI1450 family dsDNA-mimic protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=356074 GPY55_RS19220 WP_005386783.1 1905715..1906359(-) (letA) [Vibrio parahaemolyticus strain 2012AW-0224]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=356074 GPY55_RS19220 WP_005386783.1 1905715..1906359(-) (letA) [Vibrio parahaemolyticus strain 2012AW-0224]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CCTTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5

Multiple sequence alignment