Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   E5L67_RS06570 Genome accession   NZ_CP038868
Coordinates   1257029..1257544 (+) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain 16SHKX65C     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1252029..1262544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5L67_RS06545 - 1252485..1252823 (+) 339 WP_002777761.1 hypothetical protein -
  E5L67_RS06550 - 1252832..1253557 (+) 726 WP_057038164.1 phosphatidate cytidylyltransferase -
  E5L67_RS06555 dxr 1253554..1254630 (+) 1077 WP_162284646.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  E5L67_RS06560 - 1254627..1256021 (+) 1395 WP_002838049.1 M99 family carboxypeptidase catalytic domain-containing protein -
  E5L67_RS06565 tsaD 1256018..1257025 (+) 1008 WP_002838047.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  E5L67_RS06570 ctsG 1257029..1257544 (+) 516 WP_002780549.1 type II secretion system protein Machinery gene
  E5L67_RS06575 - 1257544..1258794 (+) 1251 WP_162284647.1 DUF2920 family protein -
  E5L67_RS06580 - 1258805..1260628 (+) 1824 WP_162284648.1 motility associated factor glycosyltransferase family protein -
  E5L67_RS06585 - 1260625..1262442 (+) 1818 WP_162284649.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=356073 E5L67_RS06570 WP_002780549.1 1257029..1257544(+) (ctsG) [Campylobacter coli strain 16SHKX65C]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=356073 E5L67_RS06570 WP_002780549.1 1257029..1257544(+) (ctsG) [Campylobacter coli strain 16SHKX65C]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918

Multiple sequence alignment