Detailed information NTG0356069

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: E5L67_RS06045
• Genome accession: NZ_CP038868
• Coordinates: 1149617..1150792 (+)
• Length: 391 a.a.
• NCBI ID: WP_002842963.1
• Uniprot ID: -
• Organism: Campylobacter coli strain 16SHKX65C
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1144617..1155792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5L67_RS06020	ctsR	1145195..1145506 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
E5L67_RS06025	ctsD	1145484..1146902 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
E5L67_RS06030	ctsP	1146895..1147491 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
E5L67_RS06035	-	1147488..1148075 (+)	588	WP_002810825.1	CDC27 family protein	-
E5L67_RS06040	ctsE	1148068..1149630 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
E5L67_RS06045	ctsF	1149617..1150792 (+)	1176	WP_002842963.1	type II secretion system F family protein	Machinery gene
E5L67_RS06050	-	1150789..1151553 (-)	765	WP_002781157.1	TSUP family transporter	-
E5L67_RS06055	-	1151556..1152320 (-)	765	WP_002781156.1	TIGR02757 family protein	-
E5L67_RS06060	flgK	1152337..1154163 (-)	1827	WP_052777152.1	flagellar hook-associated protein FlgK	-
E5L67_RS06065	-	1154173..1154607 (-)	435	WP_002779263.1	flagellar protein FlgN	-
E5L67_RS06070	flgM	1154650..1154847 (-)	198	WP_002792053.1	flagellar biosynthesis anti-sigma factor FlgM	-
E5L67_RS06075	-	1154910..1155251 (-)	342	WP_162284627.1	rod-binding protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45517.41 Da
• Isoelectric Point: 9.6163

>NTDB_id=356069 E5L67_RS06045 WP_002842963.1 1149617..1150792(+) (ctsF) [Campylobacter coli strain 16SHKX65C]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQKIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=356069 E5L67_RS06045 WP_002842963.1 1149617..1150792(+) (ctsF) [Campylobacter coli strain 16SHKX65C]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGACTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTCCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAAAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.914	100	0.614